I've been banging my head against this problem for a couple of days now, and I'm not sure how to proceed. Disclaimer: I'm very much a novice in this. I've been following the instructions for downloading and installing Neuron on a supercluster to which we just recently gained access. When trying to install Neuron, I've used:
./configure --prefix=`pwd` --with-paranrn --without-iv
make
make install
The output to the screen after the make is in the box below. After searching for the error messages I get ( final link failed: Nonrepresentable section on output; collect2: ld returned 1 exit status), I gather that something is wrong with the linker being used, but I don't know how to change this, or even if that is an appropriate solution. I apologize again for my ignorance here, but any help is very much appreciated.
Code: Select all
Making all in src
make[1]: Entering directory `/afs/pdc.kth.se/home/f/fearpro/Neuron/iv/src'
Making all in lib
make[2]: Entering directory `/afs/pdc.kth.se/home/f/fearpro/Neuron/iv/src/lib'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/afs/pdc.kth.se/home/f/fearpro/Neuron/iv/src/lib'
Making all in include
make[2]: Entering directory `/afs/pdc.kth.se/home/f/fearpro/Neuron/iv/src/include'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/afs/pdc.kth.se/home/f/fearpro/Neuron/iv/src/include'
Making all in bin
make[2]: Entering directory `/afs/pdc.kth.se/home/f/fearpro/Neuron/iv/src/bin'
Making all in iclass
make[3]: Entering directory `/afs/pdc.kth.se/home/f/fearpro/Neuron/iv/src/bin/iclass'
/bin/sh ../../../libtool --mode=link g++ -g -O2 -o iclass classbuffer.o classeditor.o classinfo.o dialogs.o direct.o globals.o iclass.o main.o ../../lib/libIVhines.la ../../lib/libUnidrawhines.la -L/usr/lib64 -lX11 -lXext -lm
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
g++ -g -O2 -o .libs/iclass classbuffer.o classeditor.o classinfo.o dialogs.o direct.o globals.o iclass.o main.o ../../lib/.libs/libIVhines.so -L/usr/lib64 ../../lib/.libs/libUnidrawhines.so /pdc/vol/gcc/4.3.2/lib/../lib64/libstdc++.so -lX11 -lXext -lm -Wl,--rpath -Wl,/afs/pdc.kth.se/home/f/fearpro/Neuron/iv/x86_64/lib -Wl,--rpath -Wl,/pdc/vol/gcc/4.3.2/lib/../lib64
/usr/bin/ld: .libs/iclass: hidden symbol `__dso_handle' in /afs/pdc.kth.se/pdc/vol/gcc/4.3.2/@sys/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.3.2/crtbegin.o is referenced by DSO
/usr/bin/ld: final link failed: Nonrepresentable section on output
collect2: ld returned 1 exit status
make[3]: *** [iclass] Error 1
make[3]: Leaving directory `/afs/pdc.kth.se/home/f/fearpro/Neuron/iv/src/bin/iclass'
Making all in idemo
make[3]: Entering directory `/afs/pdc.kth.se/home/f/fearpro/Neuron/iv/src/bin/idemo'
/bin/sh ../../../libtool --mode=link g++ -g -O2 -o idemo main.o ../../lib/libUnidrawhines.la ../../lib/libIVhines.la -L/usr/lib64 -lX11 -lXext -lm
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
g++ -g -O2 -o .libs/idemo main.o ../../lib/.libs/libUnidrawhines.so -L/usr/lib64 ../../lib/.libs/libIVhines.so /pdc/vol/gcc/4.3.2/lib/../lib64/libstdc++.so -lX11 -lXext -lm -Wl,--rpath -Wl,/afs/pdc.kth.se/home/f/fearpro/Neuron/iv/x86_64/lib -Wl,--rpath -Wl,/pdc/vol/gcc/4.3.2/lib/../lib64
/usr/bin/ld: .libs/idemo: hidden symbol `__dso_handle' in /afs/pdc.kth.se/pdc/vol/gcc/4.3.2/@sys/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.3.2/crtbegin.o is referenced by DSO
/usr/bin/ld: final link failed: Nonrepresentable section on output
collect2: ld returned 1 exit status
make[3]: *** [idemo] Error 1
make[3]: Leaving directory `/afs/pdc.kth.se/home/f/fearpro/Neuron/iv/src/bin/idemo'
Making all in idraw
make[3]: Entering directory `/afs/pdc.kth.se/home/f/fearpro/Neuron/iv/src/bin/idraw'
/bin/sh ../../../libtool --mode=link g++ -g -O2 -o idraw idarrow.o idarrowhead.o idarrows.o idcatalog.o idcmds.o idcomp.o idcreator.o iddialogs.o ided.o idkybd.o idvars.o main.o ../../lib/libUnidrawhines.la ../../lib/libIVhines.la -L/usr/lib64 -lX11 -lXext -lm
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
/bin/sed: -e expression #1, char 88: unknown option to `s'
g++ -g -O2 -o .libs/idraw idarrow.o idarrowhead.o idarrows.o idcatalog.o idcmds.o idcomp.o idcreator.o iddialogs.o ided.o idkybd.o idvars.o main.o ../../lib/.libs/libUnidrawhines.so -L/usr/lib64 ../../lib/.libs/libIVhines.so /pdc/vol/gcc/4.3.2/lib/../lib64/libstdc++.so -lX11 -lXext -lm -Wl,--rpath -Wl,/afs/pdc.kth.se/home/f/fearpro/Neuron/iv/x86_64/lib -Wl,--rpath -Wl,/pdc/vol/gcc/4.3.2/lib/../lib64
/usr/bin/ld: .libs/idraw: hidden symbol `__dso_handle' in /afs/pdc.kth.se/pdc/vol/gcc/4.3.2/@sys/bin/../lib/gcc/x86_64-unknown-linux-gnu/4.3.2/crtbegin.o is referenced by DSO
/usr/bin/ld: final link failed: Nonrepresentable section on output
collect2: ld returned 1 exit status
make[3]: *** [idraw] Error 1
make[3]: Leaving directory `/afs/pdc.kth.se/home/f/fearpro/Neuron/iv/src/bin/idraw'
make[2]: Leaving directory `/afs/pdc.kth.se/home/f/fearpro/Neuron/iv/src/bin'
make[1]: Leaving directory `/afs/pdc.kth.se/home/f/fearpro/Neuron/iv/src'