NEURON design

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NEURON + Python
When Python is the interpreter, what is a good
design for the interface to the basic NEURON
concepts.
Moderator: hines
Topics: 324

324 Topics

1709 Posts

Last post Re: How to use a fixed time-s…
by Yaeger View the latest post
Fri Mar 15, 2019 6:20 pm
Reaction-diffusion in NEURON
Extending NEURON to handle reaction-diffusion problems.
Moderators: hines, wwlytton, ramcdougal
Topics: 36

36 Topics

157 Posts

Last post Re: Reactions only when conce…
by adamjhn View the latest post
Mon Mar 18, 2019 11:24 am

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Last post

More NEURON + Python documentation

Last post by ramcdougal « Wed Oct 24, 2018 7:07 am
Replies: 6
by ted » Mon Mar 24, 2008 10:17 am

6 Replies

20996 Views

Last post by ramcdougal
Wed Oct 24, 2018 7:07 am
Use NEURON's native GUI tools with Python!

Last post by Mohamed_Hisham « Wed Aug 09, 2017 5:57 pm
Replies: 1
by ted » Tue Aug 08, 2017 2:48 pm

1 Replies

9742 Views

Last post by Mohamed_Hisham
Wed Aug 09, 2017 5:57 pm
More NEURON + Python resources

Last post by wjbeaver « Wed Dec 22, 2010 4:38 pm
Replies: 4
by mctavish » Wed Dec 01, 2010 3:13 pm

4 Replies

13925 Views

Last post by wjbeaver
Wed Dec 22, 2010 4:38 pm
Reactions only when concentration above a certain limit?

Last post by adamjhn « Mon Mar 18, 2019 11:24 am
Replies: 1
by bremen » Sat Mar 16, 2019 12:06 pm

1 Replies

453 Views

Last post by adamjhn
Mon Mar 18, 2019 11:24 am
How to use a fixed time-step in Python?

Last post by Yaeger « Fri Mar 15, 2019 6:20 pm
Replies: 2
by Yaeger » Thu Mar 14, 2019 5:59 pm

2 Replies

567 Views

Last post by Yaeger
Fri Mar 15, 2019 6:20 pm
BioPhysical properties of imported morphology in Python

Last post by ted « Tue Mar 12, 2019 10:57 am
Replies: 9
by sohaib786 » Tue Mar 05, 2019 9:16 am

9 Replies

380 Views

Last post by ted
Tue Mar 12, 2019 10:57 am
Connect a custom spikegenerator instead of NetSim

Last post by ted « Thu Mar 07, 2019 11:52 am
Replies: 1
by anandhupresannan » Thu Mar 07, 2019 5:11 am

1 Replies

110 Views

Last post by ted
Thu Mar 07, 2019 11:52 am
Errors importing neuron

Last post by hines « Wed Mar 06, 2019 4:36 pm
Replies: 17
by bll5z6 » Tue Feb 26, 2019 3:43 pm
1

2
17 Replies

572 Views

Last post by hines
Wed Mar 06, 2019 4:36 pm
diffusion intracellular->extracellular->intracellular

Last post by bremen « Sun Mar 03, 2019 8:17 am
Replies: 7
by bremen » Thu Feb 07, 2019 11:25 am

7 Replies

467 Views

Last post by bremen
Sun Mar 03, 2019 8:17 am
USEION in mod files for RxD species I created

Last post by ted « Fri Mar 01, 2019 5:52 pm
Replies: 3
by bschneiders » Fri Mar 01, 2019 9:48 am

3 Replies

192 Views

Last post by ted
Fri Mar 01, 2019 5:52 pm
Rset or reboot neuron without exist in python

Last post by ted « Thu Feb 28, 2019 11:34 am
Replies: 1
by anandhupresannan » Wed Feb 27, 2019 1:14 am

1 Replies

138 Views

Last post by ted
Thu Feb 28, 2019 11:34 am
Driving synaptic event using vecStim

Last post by zyc « Wed Feb 20, 2019 1:17 am
Replies: 21
by mattions » Thu Dec 09, 2010 5:49 pm
1

2
21 Replies

7589 Views

Last post by zyc
Wed Feb 20, 2019 1:17 am
RXD lower concentration limit?

Last post by RBJ « Mon Feb 18, 2019 5:13 pm
Replies: 2
by RBJ » Sat Feb 16, 2019 6:29 am

2 Replies

207 Views

Last post by RBJ
Mon Feb 18, 2019 5:13 pm
Optimizing single cells programmatically

Last post by ted « Mon Feb 11, 2019 2:32 pm
Replies: 3
by bll5z6 » Thu Feb 07, 2019 1:24 pm

3 Replies

276 Views

Last post by ted
Mon Feb 11, 2019 2:32 pm
Unexpected 3D behaviour

Last post by RBJ « Mon Feb 04, 2019 4:19 pm
Replies: 2
by RBJ » Thu Jan 31, 2019 3:24 pm

2 Replies

369 Views

Last post by RBJ
Mon Feb 04, 2019 4:19 pm
3D Dimensional RXD/CRXD

Last post by RBJ « Thu Jan 31, 2019 2:59 pm
Replies: 4
by RBJ » Fri Jan 25, 2019 2:51 pm

4 Replies

485 Views

Last post by RBJ
Thu Jan 31, 2019 2:59 pm
how to delete a Point Process object

Last post by hines « Mon Jan 28, 2019 4:46 pm
Replies: 11
by oren » Wed Jul 23, 2014 6:29 pm

11 Replies

3134 Views

Last post by hines
Mon Jan 28, 2019 4:46 pm
Different reaction rates in different sections

Last post by RBJ « Tue Jan 22, 2019 11:00 am
Replies: 3
by RBJ » Mon Jan 21, 2019 8:20 am

3 Replies

377 Views

Last post by RBJ
Tue Jan 22, 2019 11:00 am
updating Species and Rates inputs

Last post by bschneiders « Fri Jan 18, 2019 3:08 pm
Replies: 2
by bschneiders » Wed Jan 16, 2019 2:41 pm

2 Replies

281 Views

Last post by bschneiders
Fri Jan 18, 2019 3:08 pm
How can python read from a hoc file templates and procs?

Last post by ted « Thu Jan 10, 2019 5:12 pm
Replies: 7
by alexandrapierri » Fri Dec 21, 2018 6:01 pm

7 Replies

828 Views

Last post by ted
Thu Jan 10, 2019 5:12 pm
Compling Problem

Last post by hines « Sat Dec 22, 2018 1:10 pm
Replies: 21
by neurite » Thu Jun 28, 2007 5:04 pm
1

2
21 Replies

13397 Views

Last post by hines
Sat Dec 22, 2018 1:10 pm
Strange NEURON behavior with multithreading

Last post by rth « Tue Dec 11, 2018 11:53 am

by rth » Tue Dec 11, 2018 11:53 am

0 Replies

572 Views

Last post by rth
Tue Dec 11, 2018 11:53 am
Error running NEURON with embedded Python

Last post by ttarnaud « Fri Dec 07, 2018 10:56 am

by ttarnaud » Fri Dec 07, 2018 10:56 am

0 Replies

550 Views

Last post by ttarnaud
Fri Dec 07, 2018 10:56 am
Using VecStim() with CVode on

Last post by ted « Tue Dec 04, 2018 10:59 am
Replies: 3
by MarkoF » Tue Dec 04, 2018 6:20 am

3 Replies

507 Views

Last post by ted
Tue Dec 04, 2018 10:59 am
Nested for loops over SectionList objects

Last post by selfdestructo « Fri Nov 30, 2018 8:59 am
Replies: 5
by selfdestructo » Tue Nov 27, 2018 8:00 am

5 Replies

665 Views

Last post by selfdestructo
Fri Nov 30, 2018 8:59 am
Accessing inf_hh and tau_hh in the hh mechanism

Last post by yiliu021 « Tue Nov 27, 2018 1:41 pm
Replies: 6
by yiliu021 » Mon Nov 26, 2018 2:48 pm

6 Replies

653 Views

Last post by yiliu021
Tue Nov 27, 2018 1:41 pm
Reaction-Diffusion in HOC

Last post by Darshan « Sat Nov 17, 2018 2:28 am
Replies: 5
by ramcdougal » Fri Oct 27, 2017 10:09 am

5 Replies

16747 Views

Last post by Darshan
Sat Nov 17, 2018 2:28 am
maximum length for the name of a species?

Last post by Tuoma « Fri Nov 16, 2018 6:07 am
Replies: 2
by Tuoma » Wed Nov 14, 2018 10:59 am

2 Replies

582 Views

Last post by Tuoma
Fri Nov 16, 2018 6:07 am
undefined symbol: nrnmpi_myid

Last post by ted « Tue Sep 18, 2018 4:30 pm
Replies: 3
by aeronlaffere » Tue Sep 18, 2018 12:34 pm

3 Replies

1335 Views

Last post by ted
Tue Sep 18, 2018 4:30 pm
Add term to RxD solution.

Last post by ramcdougal « Fri Sep 14, 2018 10:59 am
Replies: 2
by ahmed.hamzah » Fri Sep 07, 2018 5:43 pm

2 Replies

1387 Views

Last post by ramcdougal
Fri Sep 14, 2018 10:59 am
Error in bash.exe

Last post by ted « Tue Sep 04, 2018 9:34 am
Replies: 1
by ahmed.hamzah » Fri Aug 31, 2018 2:55 pm

1 Replies

1082 Views

Last post by ted
Tue Sep 04, 2018 9:34 am
unload mechanisms dll

Last post by ted « Tue Sep 04, 2018 9:16 am
Replies: 1
by a.negrean » Thu Aug 30, 2018 11:06 am

1 Replies

1099 Views

Last post by ted
Tue Sep 04, 2018 9:16 am
How to Configure System Variables

Last post by ted « Tue Sep 04, 2018 9:15 am
Replies: 1
by ahmed.hamzah » Tue Aug 28, 2018 3:26 pm

1 Replies

1039 Views

Last post by ted
Tue Sep 04, 2018 9:15 am
RxD in Neuron

Last post by ahmed.hamzah « Mon Aug 27, 2018 7:55 pm
Replies: 3
by ahmed.hamzah » Fri Aug 24, 2018 5:08 pm

3 Replies

1312 Views

Last post by ahmed.hamzah
Mon Aug 27, 2018 7:55 pm
Not able to run simulation more than once from a NEURON+Python script

Last post by MarkoF « Wed Aug 22, 2018 10:47 am
Replies: 4
by MarkoF » Tue Aug 21, 2018 11:58 am

4 Replies

1365 Views

Last post by MarkoF
Wed Aug 22, 2018 10:47 am
Animation of synapse activation

Last post by rlindroos « Wed Aug 22, 2018 2:17 am
Replies: 4
by rlindroos » Fri Aug 17, 2018 7:31 am

4 Replies

1573 Views

Last post by rlindroos
Wed Aug 22, 2018 2:17 am
Neuron 7.5 + Python 3.7

Last post by Dradeliomecus « Tue Aug 07, 2018 9:28 am
Replies: 2
by Dradeliomecus » Tue Aug 07, 2018 4:06 am

2 Replies

2261 Views

Last post by Dradeliomecus
Tue Aug 07, 2018 9:28 am
different results from NEURON version 7.5 and NEURON version 7.4

Last post by adamjhn « Mon Jul 23, 2018 3:38 pm
Replies: 1
by yz398 » Mon Jul 23, 2018 2:29 pm

1 Replies

889 Views

Last post by adamjhn
Mon Jul 23, 2018 3:38 pm
Manual Installation of NEURON Python module on Linux Mint 18

Last post by ted « Wed Jun 20, 2018 10:35 am
Replies: 7
by Darth_Malloc » Fri Jun 15, 2018 11:54 am

7 Replies

1999 Views

Last post by ted
Wed Jun 20, 2018 10:35 am
Neuron code

Last post by ahmed.hamzah « Wed Jun 13, 2018 3:20 pm
Replies: 20
by ahmed.hamzah » Thu Jun 07, 2018 8:29 pm
1

2
20 Replies

3477 Views

Last post by ahmed.hamzah
Wed Jun 13, 2018 3:20 pm
Custom reaction rates

Last post by ramcdougal « Mon Jun 11, 2018 11:28 am
Replies: 1
by Tuoma » Mon Jun 11, 2018 11:25 am

1 Replies

741 Views

Last post by ramcdougal
Mon Jun 11, 2018 11:28 am
Different species parameters for different regions

Last post by bschneiders « Thu Jun 07, 2018 6:02 pm
Replies: 7
by bschneiders » Thu Feb 15, 2018 1:18 pm

7 Replies

1861 Views

Last post by bschneiders
Thu Jun 07, 2018 6:02 pm
Best way(s) to advance() in Python

Last post by ted « Mon May 28, 2018 9:22 pm
Replies: 3
by tommct » Fri May 25, 2018 11:39 am

3 Replies

1085 Views

Last post by ted
Mon May 28, 2018 9:22 pm
Python NEURON

Last post by hines « Fri May 25, 2018 1:16 am
Replies: 15
by FariaVS » Sat Apr 01, 2017 1:28 pm
1

2
15 Replies

14646 Views

Last post by hines
Fri May 25, 2018 1:16 am
Negative concentrations

Last post by ramcdougal « Thu May 10, 2018 5:45 pm
Replies: 5
by Tuoma » Mon May 07, 2018 10:36 am

5 Replies

1308 Views

Last post by ramcdougal
Thu May 10, 2018 5:45 pm
gui not accessible and graphs not updating while running simulations from Python

Last post by ramcdougal « Mon May 07, 2018 12:51 pm
Replies: 8
by claudioez » Tue Apr 17, 2018 9:42 am

8 Replies

1300 Views

Last post by ramcdougal
Mon May 07, 2018 12:51 pm
basic questions on RxD

Last post by ramcdougal « Tue Apr 24, 2018 10:53 am
Replies: 1
by Tuoma » Tue Apr 24, 2018 10:10 am

1 Replies

1131 Views

Last post by ramcdougal
Tue Apr 24, 2018 10:53 am
Radial diffusion using RxD?

Last post by bschneiders « Thu Apr 12, 2018 12:46 pm
Replies: 2
by bschneiders » Tue Apr 10, 2018 12:33 pm

2 Replies

1055 Views

Last post by bschneiders
Thu Apr 12, 2018 12:46 pm
Recording Currents & Current Stimulation

Last post by yiliu021 « Tue Apr 10, 2018 5:33 pm
Replies: 12
by yiliu021 » Tue Apr 03, 2018 5:40 pm

12 Replies

2279 Views

Last post by yiliu021
Tue Apr 10, 2018 5:33 pm
Cannot get Vector.play() and NetCon/NetStim work with CVODE and SaveState.restore()

Last post by hines « Tue Apr 10, 2018 4:47 am
Replies: 4
by JustasB » Fri Apr 06, 2018 7:41 pm

4 Replies

1337 Views

Last post by hines
Tue Apr 10, 2018 4:47 am

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