Anatomically detailed models

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converting hoc to swc

Last post by ted « Sun Jun 09, 2019 8:50 am
Replies: 7
by mflynn » Thu Feb 08, 2007 7:00 pm

7 Replies

5405 Views

Last post by ted
Sun Jun 09, 2019 8:50 am
Recreating JUST the morphology from an available model (that is coded in an unfamiliar way)

Last post by sbrich « Tue May 07, 2019 4:21 pm
Replies: 3
by sbrich » Fri May 03, 2019 10:46 am

3 Replies

213 Views

Last post by sbrich
Tue May 07, 2019 4:21 pm
Confusion regarding get_loc and h.cas

Last post by ted « Fri Mar 15, 2019 11:35 am
Replies: 11
by sbrich » Thu Mar 07, 2019 3:03 pm

11 Replies

1111 Views

Last post by ted
Fri Mar 15, 2019 11:35 am
Placing a point process at a known 3D location

Last post by ted « Tue Dec 18, 2018 6:39 pm
Replies: 3
by DavidSwygart » Tue Dec 11, 2018 11:45 am

3 Replies

867 Views

Last post by ted
Tue Dec 18, 2018 6:39 pm
Extracellular Fields

Last post by mzenker « Tue Oct 02, 2018 9:21 am
Replies: 29
by Sherif » Thu Oct 13, 2005 5:14 pm
1

2
29 Replies

21934 Views

Last post by mzenker
Tue Oct 02, 2018 9:21 am
Using Impedance Class for model with Ca accumulation

Last post by Darshan « Thu Sep 27, 2018 10:52 am
Replies: 8
by Darshan » Sat Sep 22, 2018 8:44 am

8 Replies

1323 Views

Last post by Darshan
Thu Sep 27, 2018 10:52 am
GUID keyword error when importing .asc

Last post by ted « Tue Sep 18, 2018 2:06 pm
Replies: 3
by aeronlaffere » Fri Aug 31, 2018 12:26 pm

3 Replies

960 Views

Last post by ted
Tue Sep 18, 2018 2:06 pm
How to calculate calcium concentration in multi-compartment model

Last post by ted « Fri Sep 14, 2018 12:21 pm
Replies: 2
by NorthWang » Sun Sep 02, 2018 7:55 am

2 Replies

929 Views

Last post by ted
Fri Sep 14, 2018 12:21 pm
how to calculate section area

Last post by fabien tell « Tue Aug 28, 2018 11:44 am
Replies: 5
by fabien tell » Mon Aug 27, 2018 5:29 am

5 Replies

1162 Views

Last post by fabien tell
Tue Aug 28, 2018 11:44 am
area() function -- stylized method -- 3d-method

Last post by ngreiner « Tue Aug 28, 2018 4:00 am
Replies: 4
by ngreiner » Mon Aug 27, 2018 5:58 pm

4 Replies

1055 Views

Last post by ngreiner
Tue Aug 28, 2018 4:00 am
Changing diameters of reconstructed neurons

Last post by ted « Tue Jul 31, 2018 10:47 am
Replies: 5
by Tuoma » Mon Jul 30, 2018 3:47 am

5 Replies

1157 Views

Last post by ted
Tue Jul 31, 2018 10:47 am
Use import3D_swc_read to read the morphology from swc file

Last post by ted « Thu Jul 19, 2018 7:44 am
Replies: 2
by zyc » Thu Jul 19, 2018 2:55 am

2 Replies

919 Views

Last post by ted
Thu Jul 19, 2018 7:44 am
Utilizing morphology from IMARIS: help classifying "filaments" as basal/apical dendrites, etc

Last post by ted « Wed Jul 18, 2018 3:58 pm
Replies: 6
by sbrich » Tue Jul 17, 2018 12:46 pm

6 Replies

975 Views

Last post by ted
Wed Jul 18, 2018 3:58 pm
Making whole cells out of Mcintyre myelinated axon model (2002) and testing short and long-term plasticity between them

Last post by moeskiski « Tue Jul 17, 2018 12:17 pm
Replies: 15
by moeskiski » Mon Jun 11, 2018 6:34 am
1

2
15 Replies

2490 Views

Last post by moeskiski
Tue Jul 17, 2018 12:17 pm
Balancing Ionic Concentration in ECF (and ICF) with two interacting cells

Last post by ted « Thu Jun 28, 2018 1:53 pm
Replies: 1
by Darshan » Mon Jun 25, 2018 4:56 am

1 Replies

853 Views

Last post by ted
Thu Jun 28, 2018 1:53 pm
importing .asc (Neurolucida ASCII) files with Python

Last post by ted « Thu Jun 07, 2018 6:10 pm
Replies: 1
by hjunji21 » Tue Jun 05, 2018 5:29 pm

1 Replies

1039 Views

Last post by ted
Thu Jun 07, 2018 6:10 pm
CellBuilder changes

Last post by ted « Tue Apr 24, 2018 3:38 pm
Replies: 6
by chels » Mon Jun 09, 2008 4:15 pm

6 Replies

2909 Views

Last post by ted
Tue Apr 24, 2018 3:38 pm
Vext and the extracellular mechanism

Last post by ted « Thu Nov 02, 2017 11:12 am
Replies: 3
by charles1 » Tue Oct 24, 2017 8:53 pm

3 Replies

15498 Views

Last post by ted
Thu Nov 02, 2017 11:12 am
Using Import3D on Mac

Last post by neuromau « Fri Jul 28, 2017 8:22 am
Replies: 4
by neuromau » Thu Jul 27, 2017 9:46 am

4 Replies

6084 Views

Last post by neuromau
Fri Jul 28, 2017 8:22 am
distance() documentation

Last post by oren « Thu Jul 27, 2017 8:14 am
Replies: 5
by Brad » Mon Feb 06, 2006 4:00 pm

5 Replies

11615 Views

Last post by oren
Thu Jul 27, 2017 8:14 am
Parameter analysis in model translation

Last post by ted « Mon Jul 03, 2017 9:14 am
Replies: 1
by pdennevis » Fri Jun 30, 2017 4:02 pm

1 Replies

4994 Views

Last post by ted
Mon Jul 03, 2017 9:14 am
2 Cells Sharing and Changing Same ECF Concentrations

Last post by Darshan « Wed Jun 28, 2017 3:31 pm
Replies: 4
by Darshan » Wed Jun 21, 2017 7:55 am

4 Replies

5854 Views

Last post by Darshan
Wed Jun 28, 2017 3:31 pm
Mapping of hoc toploogy and 3D morphology

Last post by ted « Fri Jun 09, 2017 8:12 am
Replies: 1
by shyam_u2 » Tue Jun 06, 2017 3:10 pm

1 Replies

5128 Views

Last post by ted
Fri Jun 09, 2017 8:12 am
Combining different model sources for my own model.

Last post by Roman « Mon Oct 17, 2016 12:59 pm
Replies: 2
by Roman » Tue Oct 11, 2016 2:24 pm

2 Replies

5603 Views

Last post by Roman
Mon Oct 17, 2016 12:59 pm
Adding myelin to realistic morphology

Last post by Aman_Aberra « Wed Jul 20, 2016 10:37 am
Replies: 4
by Aman_Aberra » Mon Jul 18, 2016 10:27 am

4 Replies

6134 Views

Last post by Aman_Aberra
Wed Jul 20, 2016 10:37 am
tapered dendrites

Last post by fabien tell « Mon Jun 13, 2016 11:02 am
Replies: 7
by fabien tell » Wed Jun 08, 2016 11:43 am

7 Replies

6370 Views

Last post by fabien tell
Mon Jun 13, 2016 11:02 am
rotate a .asc neurolucida morphology file and save it

Last post by youngJose « Tue May 17, 2016 8:13 am
Replies: 2
by youngJose » Tue May 10, 2016 8:22 am

2 Replies

5347 Views

Last post by youngJose
Tue May 17, 2016 8:13 am
swc to hoc conversion

Last post by Annik « Thu Apr 14, 2016 6:11 pm
Replies: 4
by Annik » Fri Apr 08, 2016 3:09 pm

4 Replies

6140 Views

Last post by Annik
Thu Apr 14, 2016 6:11 pm
delete a section from a created neuron

Last post by youngJose « Sun Apr 03, 2016 11:13 am
Replies: 6
by youngJose » Fri Mar 25, 2016 2:24 pm

6 Replies

5603 Views

Last post by youngJose
Sun Apr 03, 2016 11:13 am
Exporting a morphology ASCII file from neuron

Last post by ted « Thu Mar 31, 2016 10:22 am
Replies: 1
by sandeepb » Thu Mar 31, 2016 6:47 am

1 Replies

5343 Views

Last post by ted
Thu Mar 31, 2016 10:22 am
setting non uniform conductances in a section

Last post by ted « Mon Mar 14, 2016 4:51 pm
Replies: 6
by fabien tell » Mon Mar 14, 2016 9:06 am

6 Replies

5589 Views

Last post by ted
Mon Mar 14, 2016 4:51 pm
Synaptic Connections on Spinal Motoneurons

Last post by Alexk « Fri Feb 19, 2016 8:23 am

by Alexk » Fri Feb 19, 2016 8:23 am

0 Replies

10056 Views

Last post by Alexk
Fri Feb 19, 2016 8:23 am
Exporting a hoc file from import3d

Last post by ted « Sun Jan 03, 2016 3:53 pm
Replies: 5
by sandeepb » Fri Jan 01, 2016 11:35 am

5 Replies

5809 Views

Last post by ted
Sun Jan 03, 2016 3:53 pm
Adding a synapse

Last post by ted « Mon Dec 28, 2015 12:49 pm
Replies: 2
by maria.kesa » Mon Dec 28, 2015 11:33 am

2 Replies

5324 Views

Last post by ted
Mon Dec 28, 2015 12:49 pm
Adding a spine correctly

Last post by MBeining « Tue Dec 15, 2015 2:34 am
Replies: 2
by MBeining » Mon Dec 14, 2015 7:27 am

2 Replies

5462 Views

Last post by MBeining
Tue Dec 15, 2015 2:34 am
making a template from a neuromorpho morphology

Last post by ted « Tue Dec 01, 2015 2:02 pm
Replies: 5
by maria.kesa » Sun Nov 29, 2015 1:18 pm

5 Replies

7281 Views

Last post by ted
Tue Dec 01, 2015 2:02 pm
Issues with ion valence?

Last post by ted « Thu Nov 19, 2015 2:58 pm
Replies: 3
by Annik » Wed Nov 18, 2015 4:14 pm

3 Replies

5951 Views

Last post by ted
Thu Nov 19, 2015 2:58 pm
Questions about geometry & area(x)

Last post by ted « Fri Sep 11, 2015 11:10 am
Replies: 1
by agmccrei » Fri Sep 11, 2015 2:44 am

1 Replies

5153 Views

Last post by ted
Fri Sep 11, 2015 11:10 am
Inserting channels (some distribution) after loading SWC fil

Last post by ted « Mon Jul 06, 2015 11:06 am
Replies: 3
by dilawar » Fri Apr 10, 2015 9:13 am

3 Replies

5921 Views

Last post by ted
Mon Jul 06, 2015 11:06 am
deleting dendrites

Last post by ted « Thu Jul 02, 2015 1:47 pm
Replies: 1
by monkeybusiness » Thu Jul 02, 2015 3:18 am

1 Replies

5697 Views

Last post by ted
Thu Jul 02, 2015 1:47 pm
functioning of pt3dadd

Last post by ted « Thu Mar 12, 2015 4:18 pm
Replies: 1
by cafischer » Thu Mar 12, 2015 4:37 am

1 Replies

5733 Views

Last post by ted
Thu Mar 12, 2015 4:18 pm
templating a multi-compartmental cell

Last post by ibuki « Fri Feb 27, 2015 9:05 am
Replies: 6
by ibuki » Mon Feb 23, 2015 11:23 am

6 Replies

8905 Views

Last post by ibuki
Fri Feb 27, 2015 9:05 am
Importing 3D data: number of sections

Last post by ted « Tue Jan 13, 2015 1:36 pm
Replies: 1
by luciana » Mon Jan 12, 2015 2:48 pm

1 Replies

5942 Views

Last post by ted
Tue Jan 13, 2015 1:36 pm
Vaa3d swc files

Last post by Chiara « Sun Dec 28, 2014 2:32 pm
Replies: 3
by oren » Sat Apr 06, 2013 4:11 pm

3 Replies

8089 Views

Last post by Chiara
Sun Dec 28, 2014 2:32 pm
Version 6.0 of NeuroMorpho.Org

Last post by ted « Tue Dec 16, 2014 11:26 pm

by ted » Tue Dec 16, 2014 11:26 pm

0 Replies

5694 Views

Last post by ted
Tue Dec 16, 2014 11:26 pm
Export PlotShape

Last post by figoyouwei « Sat Nov 08, 2014 8:16 am
Replies: 6
by figoyouwei » Fri Mar 14, 2014 10:02 pm

6 Replies

7159 Views

Last post by figoyouwei
Sat Nov 08, 2014 8:16 am
Computing impedance after running define_shape

Last post by neuromau « Sun Sep 21, 2014 7:22 pm
Replies: 2
by neuromau » Fri Sep 19, 2014 4:57 pm

2 Replies

6092 Views

Last post by neuromau
Sun Sep 21, 2014 7:22 pm
Insert point processes in a Starburst Cell model

Last post by ted « Wed Sep 03, 2014 4:27 pm
Replies: 1
by ssalgado » Wed Sep 03, 2014 1:16 pm

1 Replies

5925 Views

Last post by ted
Wed Sep 03, 2014 4:27 pm
Issues loading swc somas

Last post by ted « Thu Aug 14, 2014 12:31 pm
Replies: 3
by wlkath » Wed Aug 13, 2014 4:10 pm

3 Replies

7138 Views

Last post by ted
Thu Aug 14, 2014 12:31 pm
Problem in putting detailed morphology into a template

Last post by ted « Wed Aug 13, 2014 8:20 pm
Replies: 10
by Randy » Thu Nov 12, 2009 9:39 pm

10 Replies

9396 Views

Last post by ted
Wed Aug 13, 2014 8:20 pm

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