Anatomically detailed models

New Topic

187 topics

Topics

Replies

Views

Last post

Neuron transforms soma that is loaded from .swc. What is the rule for it?

Last post by vogdb « Fri Feb 21, 2020 7:12 am
Replies: 4
by vogdb » Mon Feb 10, 2020 6:58 am

4 Replies

281 Views

Last post by vogdb
Fri Feb 21, 2020 7:12 am
altering length and diameter over a subset

Last post by ted « Sun Dec 22, 2019 9:36 pm
Replies: 1
by fabien tell » Fri Dec 20, 2019 9:41 am

1 Replies

267 Views

Last post by ted
Sun Dec 22, 2019 9:36 pm
Is there any way to bifurcate axon?

Last post by ted « Wed Dec 18, 2019 9:10 pm
Replies: 3
by Christine Chung » Tue Dec 17, 2019 12:02 am

3 Replies

248 Views

Last post by ted
Wed Dec 18, 2019 9:10 pm
Precise 3D morphology

Last post by ted « Thu Dec 12, 2019 10:49 am
Replies: 6
by ziemek » Tue Dec 10, 2019 2:41 pm

6 Replies

442 Views

Last post by ted
Thu Dec 12, 2019 10:49 am
measurments of area by section

Last post by fabien tell « Mon Nov 18, 2019 7:22 am
Replies: 2
by fabien tell » Fri Nov 15, 2019 8:55 am

2 Replies

377 Views

Last post by fabien tell
Mon Nov 18, 2019 7:22 am
3D rotation in Cell Builder

Last post by ted « Wed Oct 09, 2019 10:29 am
Replies: 3
by DavidSwygart » Fri Oct 04, 2019 5:37 pm

3 Replies

1659 Views

Last post by ted
Wed Oct 09, 2019 10:29 am
How does 'Z. F. Mainen and T. J. Sejnowski (1996)' model work?

Last post by Christine Chung « Fri Aug 09, 2019 1:48 am
Replies: 2
by Christine Chung » Thu Aug 08, 2019 7:51 am

2 Replies

859 Views

Last post by Christine Chung
Fri Aug 09, 2019 1:48 am
Neurolucida to NEURON best practices?

Last post by hines « Tue Jul 16, 2019 8:34 pm
Replies: 26
by bsuter » Fri Oct 29, 2010 2:36 am
1

2
26 Replies

27334 Views

Last post by hines
Tue Jul 16, 2019 8:34 pm
Morphology import error

Last post by ted « Mon Jul 15, 2019 3:30 pm
Replies: 4
by shyam_u2 » Tue Jul 02, 2019 10:07 am

4 Replies

974 Views

Last post by ted
Mon Jul 15, 2019 3:30 pm
converting hoc to swc

Last post by ted « Sun Jun 09, 2019 8:50 am
Replies: 7
by mflynn » Thu Feb 08, 2007 7:00 pm

7 Replies

6969 Views

Last post by ted
Sun Jun 09, 2019 8:50 am
Recreating JUST the morphology from an available model (that is coded in an unfamiliar way)

Last post by sbrich « Tue May 07, 2019 4:21 pm
Replies: 3
by sbrich » Fri May 03, 2019 10:46 am

3 Replies

1185 Views

Last post by sbrich
Tue May 07, 2019 4:21 pm
Confusion regarding get_loc and h.cas

Last post by ted « Fri Mar 15, 2019 11:35 am
Replies: 11
by sbrich » Thu Mar 07, 2019 3:03 pm

11 Replies

2785 Views

Last post by ted
Fri Mar 15, 2019 11:35 am
Placing a point process at a known 3D location

Last post by ted « Tue Dec 18, 2018 6:39 pm
Replies: 3
by DavidSwygart » Tue Dec 11, 2018 11:45 am

3 Replies

1665 Views

Last post by ted
Tue Dec 18, 2018 6:39 pm
Extracellular Fields

Last post by mzenker « Tue Oct 02, 2018 9:21 am
Replies: 29
by Sherif » Thu Oct 13, 2005 5:14 pm
1

2
29 Replies

36904 Views

Last post by mzenker
Tue Oct 02, 2018 9:21 am
Using Impedance Class for model with Ca accumulation

Last post by Darshan « Thu Sep 27, 2018 10:52 am
Replies: 8
by Darshan » Sat Sep 22, 2018 8:44 am

8 Replies

2493 Views

Last post by Darshan
Thu Sep 27, 2018 10:52 am
GUID keyword error when importing .asc

Last post by ted « Tue Sep 18, 2018 2:06 pm
Replies: 3
by aeronlaffere » Fri Aug 31, 2018 12:26 pm

3 Replies

1658 Views

Last post by ted
Tue Sep 18, 2018 2:06 pm
How to calculate calcium concentration in multi-compartment model

Last post by ted « Fri Sep 14, 2018 12:21 pm
Replies: 2
by NorthWang » Sun Sep 02, 2018 7:55 am

2 Replies

1586 Views

Last post by ted
Fri Sep 14, 2018 12:21 pm
how to calculate section area

Last post by fabien tell « Tue Aug 28, 2018 11:44 am
Replies: 5
by fabien tell » Mon Aug 27, 2018 5:29 am

5 Replies

2069 Views

Last post by fabien tell
Tue Aug 28, 2018 11:44 am
area() function -- stylized method -- 3d-method

Last post by ngreiner « Tue Aug 28, 2018 4:00 am
Replies: 4
by ngreiner » Mon Aug 27, 2018 5:58 pm

4 Replies

1865 Views

Last post by ngreiner
Tue Aug 28, 2018 4:00 am
Changing diameters of reconstructed neurons

Last post by ted « Tue Jul 31, 2018 10:47 am
Replies: 5
by Tuoma » Mon Jul 30, 2018 3:47 am

5 Replies

2019 Views

Last post by ted
Tue Jul 31, 2018 10:47 am
Use import3D_swc_read to read the morphology from swc file

Last post by ted « Thu Jul 19, 2018 7:44 am
Replies: 2
by zyc » Thu Jul 19, 2018 2:55 am

2 Replies

1565 Views

Last post by ted
Thu Jul 19, 2018 7:44 am
Utilizing morphology from IMARIS: help classifying "filaments" as basal/apical dendrites, etc

Last post by ted « Wed Jul 18, 2018 3:58 pm
Replies: 6
by sbrich » Tue Jul 17, 2018 12:46 pm

6 Replies

1762 Views

Last post by ted
Wed Jul 18, 2018 3:58 pm
Making whole cells out of Mcintyre myelinated axon model (2002) and testing short and long-term plasticity between them

Last post by moeskiski « Tue Jul 17, 2018 12:17 pm
Replies: 15
by moeskiski » Mon Jun 11, 2018 6:34 am
1

2
15 Replies

5739 Views

Last post by moeskiski
Tue Jul 17, 2018 12:17 pm
Balancing Ionic Concentration in ECF (and ICF) with two interacting cells

Last post by ted « Thu Jun 28, 2018 1:53 pm
Replies: 1
by Darshan » Mon Jun 25, 2018 4:56 am

1 Replies

1397 Views

Last post by ted
Thu Jun 28, 2018 1:53 pm
importing .asc (Neurolucida ASCII) files with Python

Last post by ted « Thu Jun 07, 2018 6:10 pm
Replies: 1
by hjunji21 » Tue Jun 05, 2018 5:29 pm

1 Replies

2064 Views

Last post by ted
Thu Jun 07, 2018 6:10 pm
CellBuilder changes

Last post by ted « Tue Apr 24, 2018 3:38 pm
Replies: 6
by chels » Mon Jun 09, 2008 4:15 pm

6 Replies

3741 Views

Last post by ted
Tue Apr 24, 2018 3:38 pm
Vext and the extracellular mechanism

Last post by ted « Thu Nov 02, 2017 11:12 am
Replies: 3
by charles1 » Tue Oct 24, 2017 8:53 pm

3 Replies

17618 Views

Last post by ted
Thu Nov 02, 2017 11:12 am
Using Import3D on Mac

Last post by neuromau « Fri Jul 28, 2017 8:22 am
Replies: 4
by neuromau » Thu Jul 27, 2017 9:46 am

4 Replies

6845 Views

Last post by neuromau
Fri Jul 28, 2017 8:22 am
distance() documentation

Last post by oren « Thu Jul 27, 2017 8:14 am
Replies: 5
by Brad » Mon Feb 06, 2006 4:00 pm

5 Replies

12510 Views

Last post by oren
Thu Jul 27, 2017 8:14 am
Parameter analysis in model translation

Last post by ted « Mon Jul 03, 2017 9:14 am
Replies: 1
by pdennevis » Fri Jun 30, 2017 4:02 pm

1 Replies

5508 Views

Last post by ted
Mon Jul 03, 2017 9:14 am
2 Cells Sharing and Changing Same ECF Concentrations

Last post by Darshan « Wed Jun 28, 2017 3:31 pm
Replies: 4
by Darshan » Wed Jun 21, 2017 7:55 am

4 Replies

6579 Views

Last post by Darshan
Wed Jun 28, 2017 3:31 pm
Mapping of hoc toploogy and 3D morphology

Last post by ted « Fri Jun 09, 2017 8:12 am
Replies: 1
by shyam_u2 » Tue Jun 06, 2017 3:10 pm

1 Replies

5611 Views

Last post by ted
Fri Jun 09, 2017 8:12 am
Combining different model sources for my own model.

Last post by Roman « Mon Oct 17, 2016 12:59 pm
Replies: 2
by Roman » Tue Oct 11, 2016 2:24 pm

2 Replies

6211 Views

Last post by Roman
Mon Oct 17, 2016 12:59 pm
Adding myelin to realistic morphology

Last post by Aman_Aberra « Wed Jul 20, 2016 10:37 am
Replies: 4
by Aman_Aberra » Mon Jul 18, 2016 10:27 am

4 Replies

7118 Views

Last post by Aman_Aberra
Wed Jul 20, 2016 10:37 am
tapered dendrites

Last post by fabien tell « Mon Jun 13, 2016 11:02 am
Replies: 7
by fabien tell » Wed Jun 08, 2016 11:43 am

7 Replies

7352 Views

Last post by fabien tell
Mon Jun 13, 2016 11:02 am
rotate a .asc neurolucida morphology file and save it

Last post by youngJose « Tue May 17, 2016 8:13 am
Replies: 2
by youngJose » Tue May 10, 2016 8:22 am

2 Replies

5877 Views

Last post by youngJose
Tue May 17, 2016 8:13 am
swc to hoc conversion

Last post by Annik « Thu Apr 14, 2016 6:11 pm
Replies: 4
by Annik » Fri Apr 08, 2016 3:09 pm

4 Replies

6968 Views

Last post by Annik
Thu Apr 14, 2016 6:11 pm
delete a section from a created neuron

Last post by youngJose « Sun Apr 03, 2016 11:13 am
Replies: 6
by youngJose » Fri Mar 25, 2016 2:24 pm

6 Replies

6809 Views

Last post by youngJose
Sun Apr 03, 2016 11:13 am
Exporting a morphology ASCII file from neuron

Last post by ted « Thu Mar 31, 2016 10:22 am
Replies: 1
by sandeepb » Thu Mar 31, 2016 6:47 am

1 Replies

5908 Views

Last post by ted
Thu Mar 31, 2016 10:22 am
setting non uniform conductances in a section

Last post by ted « Mon Mar 14, 2016 4:51 pm
Replies: 6
by fabien tell » Mon Mar 14, 2016 9:06 am

6 Replies

6349 Views

Last post by ted
Mon Mar 14, 2016 4:51 pm
Synaptic Connections on Spinal Motoneurons

Last post by Alexk « Fri Feb 19, 2016 8:23 am

by Alexk » Fri Feb 19, 2016 8:23 am

0 Replies

10477 Views

Last post by Alexk
Fri Feb 19, 2016 8:23 am
Exporting a hoc file from import3d

Last post by ted « Sun Jan 03, 2016 3:53 pm
Replies: 5
by sandeepb » Fri Jan 01, 2016 11:35 am

5 Replies

6519 Views

Last post by ted
Sun Jan 03, 2016 3:53 pm
Adding a synapse

Last post by ted « Mon Dec 28, 2015 12:49 pm
Replies: 2
by maria.kesa » Mon Dec 28, 2015 11:33 am

2 Replies

5887 Views

Last post by ted
Mon Dec 28, 2015 12:49 pm
Adding a spine correctly

Last post by MBeining « Tue Dec 15, 2015 2:34 am
Replies: 2
by MBeining » Mon Dec 14, 2015 7:27 am

2 Replies

6801 Views

Last post by MBeining
Tue Dec 15, 2015 2:34 am
making a template from a neuromorpho morphology

Last post by ted « Tue Dec 01, 2015 2:02 pm
Replies: 5
by maria.kesa » Sun Nov 29, 2015 1:18 pm

5 Replies

8548 Views

Last post by ted
Tue Dec 01, 2015 2:02 pm
Issues with ion valence?

Last post by ted « Thu Nov 19, 2015 2:58 pm
Replies: 3
by Annik » Wed Nov 18, 2015 4:14 pm

3 Replies

6591 Views

Last post by ted
Thu Nov 19, 2015 2:58 pm
Questions about geometry & area(x)

Last post by ted « Fri Sep 11, 2015 11:10 am
Replies: 1
by agmccrei » Fri Sep 11, 2015 2:44 am

1 Replies

5628 Views

Last post by ted
Fri Sep 11, 2015 11:10 am
Inserting channels (some distribution) after loading SWC fil

Last post by ted « Mon Jul 06, 2015 11:06 am
Replies: 3
by dilawar » Fri Apr 10, 2015 9:13 am

3 Replies

6573 Views

Last post by ted
Mon Jul 06, 2015 11:06 am
deleting dendrites

Last post by ted « Thu Jul 02, 2015 1:47 pm
Replies: 1
by monkeybusiness » Thu Jul 02, 2015 3:18 am

1 Replies

6784 Views

Last post by ted
Thu Jul 02, 2015 1:47 pm
functioning of pt3dadd

Last post by ted « Thu Mar 12, 2015 4:18 pm
Replies: 1
by cafischer » Thu Mar 12, 2015 4:37 am

1 Replies

6346 Views

Last post by ted
Thu Mar 12, 2015 4:18 pm

New Topic

187 topics

Return to Board Index

Forum permissions

You cannot post new topics in this forum
You cannot reply to topics in this forum
You cannot edit your posts in this forum
You cannot delete your posts in this forum