Adding new mechanisms and functions to NEURON

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"My mechanisms don't load!"

Last post by mildan « Wed Jun 20, 2018 4:38 am
Replies: 21
by ted » Wed Aug 11, 2010 10:30 am
1

2
21 Replies

31336 Views

Last post by mildan
Wed Jun 20, 2018 4:38 am
How to implement temperature dependent rates

Last post by bosleyjr « Tue Jun 18, 2013 4:59 pm
Replies: 3
by ted » Wed Mar 15, 2006 12:15 pm

3 Replies

16338 Views

Last post by bosleyjr
Tue Jun 18, 2013 4:59 pm
Block sequence in NMODL

Last post by ted « Thu Aug 31, 2006 11:05 am

by ted » Thu Aug 31, 2006 11:05 am

0 Replies

14319 Views

Last post by ted
Thu Aug 31, 2006 11:05 am
Adding new mechanisms to NEURON

Last post by ted « Thu Aug 03, 2006 5:11 pm
Replies: 1
by ted » Thu Dec 15, 2005 4:35 pm

1 Replies

19412 Views

Last post by ted
Thu Aug 03, 2006 5:11 pm
Where to learn about mod files and NMODL

Last post by ted « Thu May 19, 2005 10:11 pm

by ted » Thu May 19, 2005 10:11 pm

0 Replies

27263 Views

Last post by ted
Thu May 19, 2005 10:11 pm
Interfacing NEURON with other software on runtime

Last post by Ricardo_Molinari « Wed Jan 29, 2020 4:17 pm
Replies: 4
by Ricardo_Molinari » Tue Jan 28, 2020 5:32 pm

4 Replies

140 Views

Last post by Ricardo_Molinari
Wed Jan 29, 2020 4:17 pm
Modeling leaky integrate-and-fire neuron including Hodgkin–Huxley-like currents

Last post by ted « Tue Jan 28, 2020 12:35 pm
Replies: 1
by harrisonZ » Mon Jan 27, 2020 4:26 pm

1 Replies

99 Views

Last post by ted
Tue Jan 28, 2020 12:35 pm
Adding cilia with an added mechanism to a dendrite

Last post by bdut « Thu Jan 16, 2020 1:40 am
Replies: 2
by bdut » Mon Jan 06, 2020 3:17 am

2 Replies

123 Views

Last post by bdut
Thu Jan 16, 2020 1:40 am
Accessing state variables of one mechanisn in another mechanism

Last post by bdut « Fri Jan 03, 2020 4:52 am
Replies: 4
by bdut » Sun Dec 01, 2019 11:35 pm

4 Replies

307 Views

Last post by bdut
Fri Jan 03, 2020 4:52 am
using diam and L params inside MODL file

Last post by adamjhn « Mon Dec 02, 2019 3:12 pm
Replies: 5
by ziemek » Mon Nov 25, 2019 11:16 am

5 Replies

508 Views

Last post by adamjhn
Mon Dec 02, 2019 3:12 pm
where to declare cai and cao ?

Last post by ted « Sun Dec 01, 2019 11:37 am
Replies: 1
by rth » Sun Nov 24, 2019 10:54 pm

1 Replies

180 Views

Last post by ted
Sun Dec 01, 2019 11:37 am
NMODL: COMPARTMENT statement in the KINETIC section

Last post by ziemek « Mon Nov 25, 2019 6:16 am
Replies: 2
by ziemek » Thu Nov 21, 2019 7:47 am

2 Replies

221 Views

Last post by ziemek
Mon Nov 25, 2019 6:16 am
Failure rates in synapse model

Last post by jofrony « Mon Nov 25, 2019 5:05 am

by jofrony » Mon Nov 25, 2019 5:05 am

0 Replies

176 Views

Last post by jofrony
Mon Nov 25, 2019 5:05 am
Calcium diffusion and shells

Last post by ted « Wed Nov 20, 2019 10:36 am
Replies: 5
by ziemek » Thu Nov 14, 2019 7:41 am

5 Replies

359 Views

Last post by ted
Wed Nov 20, 2019 10:36 am
adrunge not thread safe

Last post by hines « Wed Nov 06, 2019 6:34 am
Replies: 2
by wwlytton » Tue Nov 05, 2019 6:34 pm

2 Replies

293 Views

Last post by hines
Wed Nov 06, 2019 6:34 am
Adding delay to a graded synapse model

Last post by subhacom « Mon Oct 07, 2019 1:36 pm
Replies: 2
by subhacom » Mon Oct 07, 2019 11:04 am

2 Replies

420 Views

Last post by subhacom
Mon Oct 07, 2019 1:36 pm
Solving 8 interdependent differential equations

Last post by bdut « Fri Sep 20, 2019 11:36 am
Replies: 6
by bdut » Thu Sep 19, 2019 12:53 am

6 Replies

688 Views

Last post by bdut
Fri Sep 20, 2019 11:36 am
mknrndll fils with undefined reference

Last post by JimH « Sat Sep 07, 2019 1:20 pm
Replies: 2
by JimH » Thu Sep 05, 2019 2:50 pm

2 Replies

938 Views

Last post by JimH
Sat Sep 07, 2019 1:20 pm
Differences between NONSPECIFIC_CURRENT & ELECTRODE_CURRENT

Last post by Kvogt « Wed Jul 17, 2019 6:28 pm
Replies: 9
by shailesh » Sun Aug 11, 2013 4:09 am

9 Replies

5697 Views

Last post by Kvogt
Wed Jul 17, 2019 6:28 pm
Extending Single-Compartment to Multi-Compartment model

Last post by Kvogt « Wed Jul 17, 2019 6:27 pm
Replies: 4
by Kvogt » Wed Jun 26, 2019 12:15 pm

4 Replies

988 Views

Last post by Kvogt
Wed Jul 17, 2019 6:27 pm
How does a section recognize a mechanism's current?

Last post by duytanph « Wed Jul 17, 2019 2:51 pm
Replies: 2
by duytanph » Fri Jul 12, 2019 5:00 pm

2 Replies

781 Views

Last post by duytanph
Wed Jul 17, 2019 2:51 pm
Membrane Potential Equation

Last post by Kvogt « Wed Jun 19, 2019 5:43 pm
Replies: 2
by Kvogt » Thu Jun 13, 2019 2:00 pm

2 Replies

732 Views

Last post by Kvogt
Wed Jun 19, 2019 5:43 pm
Loading New Artifical Cell into NEURON

Last post by ted « Mon Jun 17, 2019 10:46 am
Replies: 5
by tmazing » Fri Jun 14, 2019 1:41 pm

5 Replies

973 Views

Last post by ted
Mon Jun 17, 2019 10:46 am
Using ion_style() to treat eca as a fixed parameter and cai as a dynamical variable

Last post by pascal « Thu May 30, 2019 6:09 pm
Replies: 2
by pascal » Wed May 29, 2019 2:32 pm

2 Replies

738 Views

Last post by pascal
Thu May 30, 2019 6:09 pm
Where to find squid.hoc associated with hh.mod

Last post by pascal « Fri May 24, 2019 12:47 am
Replies: 8
by pascal » Tue Oct 09, 2018 12:13 pm

8 Replies

4010 Views

Last post by pascal
Fri May 24, 2019 12:47 am
Stochastic gating as a function of external variable (light, membrane tension)

Last post by aNNe « Wed May 22, 2019 8:41 pm
Replies: 3
by aNNe » Tue May 14, 2019 6:30 am

3 Replies

949 Views

Last post by aNNe
Wed May 22, 2019 8:41 pm
NMODL Compile Error: Assertion failed!

Last post by Darshan « Tue Mar 12, 2019 4:11 pm
Replies: 10
by Darshan » Sat Mar 09, 2019 1:38 am

10 Replies

2606 Views

Last post by Darshan
Tue Mar 12, 2019 4:11 pm
adding noise to input

Last post by menica « Tue Mar 12, 2019 9:59 am
Replies: 1
by menica » Fri Mar 08, 2019 8:43 am

1 Replies

698 Views

Last post by menica
Tue Mar 12, 2019 9:59 am
How to quantify spike number using additional criteria such as amplitude

Last post by ted « Thu Feb 28, 2019 10:49 am
Replies: 1
by zylittlep » Mon Feb 25, 2019 4:41 pm

1 Replies

677 Views

Last post by ted
Thu Feb 28, 2019 10:49 am
Adding white nose to current injection

Last post by menica « Tue Feb 26, 2019 9:18 am
Replies: 10
by Skyfire79 » Mon Sep 27, 2010 6:21 pm

10 Replies

9768 Views

Last post by menica
Tue Feb 26, 2019 9:18 am
How to change parameter used in NMODL for channel kinetics in hoc

Last post by zylittlep « Mon Feb 25, 2019 4:33 pm
Replies: 11
by zylittlep » Tue Feb 19, 2019 5:22 pm

11 Replies

1769 Views

Last post by zylittlep
Mon Feb 25, 2019 4:33 pm
KINETIC block for enzymatic reaction

Last post by hines « Tue Jan 22, 2019 5:30 pm
Replies: 1
by simonvhardy » Mon Jan 21, 2019 5:18 pm

1 Replies

923 Views

Last post by hines
Tue Jan 22, 2019 5:30 pm
Ineffective simulation with small duration current injection

Last post by ted « Fri Aug 24, 2018 3:07 pm
Replies: 2
by doctorxue » Fri Aug 24, 2018 12:03 pm

2 Replies

1332 Views

Last post by ted
Fri Aug 24, 2018 3:07 pm
HOC kernel for Jupyter

Last post by bll5z6 « Fri Aug 17, 2018 11:17 am
Replies: 3
by bll5z6 » Thu May 03, 2018 3:03 pm

3 Replies

1888 Views

Last post by bll5z6
Fri Aug 17, 2018 11:17 am
Computational Optogenetics: modelling ChR2 in NMODL

Last post by ted « Mon Aug 13, 2018 10:14 pm
Replies: 2
by mgiugliano » Thu Aug 09, 2018 6:45 am

2 Replies

1414 Views

Last post by ted
Mon Aug 13, 2018 10:14 pm
A question about USEION statement

Last post by ramcdougal « Mon Aug 13, 2018 1:06 pm
Replies: 1
by doctorxue » Mon Aug 13, 2018 11:42 am

1 Replies

1196 Views

Last post by ramcdougal
Mon Aug 13, 2018 1:06 pm
Inconsistent units

Last post by ted « Mon Aug 06, 2018 9:43 pm
Replies: 3
by shyam_u2 » Sun Aug 05, 2018 5:55 pm

3 Replies

1312 Views

Last post by ted
Mon Aug 06, 2018 9:43 pm
Making a timer dummy cell for benchmarking

Last post by bcumming « Wed Jun 20, 2018 8:07 am
Replies: 3
by bcumming » Thu Jun 07, 2018 10:02 am

3 Replies

1512 Views

Last post by bcumming
Wed Jun 20, 2018 8:07 am
firing frequency

Last post by ted « Fri May 04, 2018 12:53 pm
Replies: 3
by fabien tell » Fri May 04, 2018 8:07 am

3 Replies

1703 Views

Last post by ted
Fri May 04, 2018 12:53 pm
Three questions on extracellular stimulation and recording

Last post by luciana « Mon Mar 05, 2018 6:15 pm
Replies: 7
by luckychild » Fri Mar 31, 2017 12:54 pm

7 Replies

7414 Views

Last post by luciana
Mon Mar 05, 2018 6:15 pm
Direction of current in point process

Last post by cafischer « Wed Feb 07, 2018 4:34 am
Replies: 2
by cafischer » Tue Feb 06, 2018 3:43 pm

2 Replies

1632 Views

Last post by cafischer
Wed Feb 07, 2018 4:34 am
Rectifying Gap Junctions without using Linear Circuit Builder?

Last post by ted « Tue Jan 23, 2018 2:47 pm
Replies: 1
by varmaalok22 » Sun Jan 14, 2018 11:59 pm

1 Replies

2229 Views

Last post by ted
Tue Jan 23, 2018 2:47 pm
Using Ca2+ currents in point and distributed processes

Last post by menica « Tue Dec 05, 2017 3:29 pm
Replies: 6
by hkur » Thu Mar 25, 2010 8:44 am

6 Replies

4518 Views

Last post by menica
Tue Dec 05, 2017 3:29 pm
Which libnrnmech.so file to load on linux/mac

Last post by ted « Mon Nov 27, 2017 12:02 pm
Replies: 3
by MBeining » Fri Nov 17, 2017 8:42 am

3 Replies

12678 Views

Last post by ted
Mon Nov 27, 2017 12:02 pm
pump kinetic scheme

Last post by menica « Fri Nov 17, 2017 10:00 am
Replies: 20
by jamie » Thu Jan 04, 2007 12:48 pm
1

2
20 Replies

31845 Views

Last post by menica
Fri Nov 17, 2017 10:00 am
Inconsistent behavior on modeling p2y2 Receptor

Last post by ted « Tue Nov 14, 2017 9:30 am
Replies: 3
by Archit » Mon Nov 06, 2017 12:03 am

3 Replies

14424 Views

Last post by ted
Tue Nov 14, 2017 9:30 am
NEURON's CVode method ignores conservation

Last post by ted « Sun Sep 24, 2017 2:57 pm
Replies: 1
by yan1982 » Fri Sep 22, 2017 6:47 pm

1 Replies

9436 Views

Last post by ted
Sun Sep 24, 2017 2:57 pm
Rounding error for function in derivative block

Last post by ted « Sun Sep 03, 2017 12:00 am
Replies: 6
by Tom Close » Fri Mar 13, 2015 7:56 pm

6 Replies

10960 Views

Last post by ted
Sun Sep 03, 2017 12:00 am
pass an array from hoc to a mod file

Last post by ted « Tue May 16, 2017 10:45 am
Replies: 1
by oren » Tue May 16, 2017 8:07 am

1 Replies

5850 Views

Last post by ted
Tue May 16, 2017 10:45 am
HCN channels modulation by cAMP

Last post by ted « Wed Mar 01, 2017 10:39 pm
Replies: 3
by mart » Wed Mar 01, 2017 6:01 am

3 Replies

6146 Views

Last post by ted
Wed Mar 01, 2017 10:39 pm

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