Adding new mechanisms and functions to NEURON

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"My mechanisms don't load!"

Last post by mildan « Wed Jun 20, 2018 4:38 am
Replies: 21
by ted » Wed Aug 11, 2010 10:30 am
1

2
21 Replies

27370 Views

Last post by mildan
Wed Jun 20, 2018 4:38 am
How to implement temperature dependent rates

Last post by bosleyjr « Tue Jun 18, 2013 4:59 pm
Replies: 3
by ted » Wed Mar 15, 2006 12:15 pm

3 Replies

15346 Views

Last post by bosleyjr
Tue Jun 18, 2013 4:59 pm
Block sequence in NMODL

Last post by ted « Thu Aug 31, 2006 11:05 am

by ted » Thu Aug 31, 2006 11:05 am

0 Replies

13764 Views

Last post by ted
Thu Aug 31, 2006 11:05 am
Adding new mechanisms to NEURON

Last post by ted « Thu Aug 03, 2006 5:11 pm
Replies: 1
by ted » Thu Dec 15, 2005 4:35 pm

1 Replies

18615 Views

Last post by ted
Thu Aug 03, 2006 5:11 pm
Where to learn about mod files and NMODL

Last post by ted « Thu May 19, 2005 10:11 pm

by ted » Thu May 19, 2005 10:11 pm

0 Replies

25912 Views

Last post by ted
Thu May 19, 2005 10:11 pm
Loading New Artifical Cell into NEURON

Last post by ted « Mon Jun 17, 2019 10:46 am
Replies: 5
by tmazing » Fri Jun 14, 2019 1:41 pm

5 Replies

85 Views

Last post by ted
Mon Jun 17, 2019 10:46 am
Membrane Potential Equation

Last post by ted « Fri Jun 14, 2019 11:04 am
Replies: 1
by Kvogt » Thu Jun 13, 2019 2:00 pm

1 Replies

50 Views

Last post by ted
Fri Jun 14, 2019 11:04 am
Using ion_style() to treat eca as a fixed parameter and cai as a dynamical variable

Last post by pascal « Thu May 30, 2019 6:09 pm
Replies: 2
by pascal » Wed May 29, 2019 2:32 pm

2 Replies

94 Views

Last post by pascal
Thu May 30, 2019 6:09 pm
Where to find squid.hoc associated with hh.mod

Last post by pascal « Fri May 24, 2019 12:47 am
Replies: 8
by pascal » Tue Oct 09, 2018 12:13 pm

8 Replies

1601 Views

Last post by pascal
Fri May 24, 2019 12:47 am
Stochastic gating as a function of external variable (light, membrane tension)

Last post by aNNe « Wed May 22, 2019 8:41 pm
Replies: 3
by aNNe » Tue May 14, 2019 6:30 am

3 Replies

164 Views

Last post by aNNe
Wed May 22, 2019 8:41 pm
NMODL Compile Error: Assertion failed!

Last post by Darshan « Tue Mar 12, 2019 4:11 pm
Replies: 10
by Darshan » Sat Mar 09, 2019 1:38 am

10 Replies

1080 Views

Last post by Darshan
Tue Mar 12, 2019 4:11 pm
adding noise to input

Last post by menica « Tue Mar 12, 2019 9:59 am
Replies: 1
by menica » Fri Mar 08, 2019 8:43 am

1 Replies

226 Views

Last post by menica
Tue Mar 12, 2019 9:59 am
How to quantify spike number using additional criteria such as amplitude

Last post by ted « Thu Feb 28, 2019 10:49 am
Replies: 1
by zylittlep » Mon Feb 25, 2019 4:41 pm

1 Replies

242 Views

Last post by ted
Thu Feb 28, 2019 10:49 am
Adding white nose to current injection

Last post by menica « Tue Feb 26, 2019 9:18 am
Replies: 10
by Skyfire79 » Mon Sep 27, 2010 6:21 pm

10 Replies

7001 Views

Last post by menica
Tue Feb 26, 2019 9:18 am
How to change parameter used in NMODL for channel kinetics in hoc

Last post by zylittlep « Mon Feb 25, 2019 4:33 pm
Replies: 11
by zylittlep » Tue Feb 19, 2019 5:22 pm

11 Replies

660 Views

Last post by zylittlep
Mon Feb 25, 2019 4:33 pm
KINETIC block for enzymatic reaction

Last post by hines « Tue Jan 22, 2019 5:30 pm
Replies: 1
by simonvhardy » Mon Jan 21, 2019 5:18 pm

1 Replies

488 Views

Last post by hines
Tue Jan 22, 2019 5:30 pm
Ineffective simulation with small duration current injection

Last post by ted « Fri Aug 24, 2018 3:07 pm
Replies: 2
by doctorxue » Fri Aug 24, 2018 12:03 pm

2 Replies

843 Views

Last post by ted
Fri Aug 24, 2018 3:07 pm
HOC kernel for Jupyter

Last post by bll5z6 « Fri Aug 17, 2018 11:17 am
Replies: 3
by bll5z6 » Thu May 03, 2018 3:03 pm

3 Replies

1108 Views

Last post by bll5z6
Fri Aug 17, 2018 11:17 am
Computational Optogenetics: modelling ChR2 in NMODL

Last post by ted « Mon Aug 13, 2018 10:14 pm
Replies: 2
by mgiugliano » Thu Aug 09, 2018 6:45 am

2 Replies

893 Views

Last post by ted
Mon Aug 13, 2018 10:14 pm
A question about USEION statement

Last post by ramcdougal « Mon Aug 13, 2018 1:06 pm
Replies: 1
by doctorxue » Mon Aug 13, 2018 11:42 am

1 Replies

759 Views

Last post by ramcdougal
Mon Aug 13, 2018 1:06 pm
Inconsistent units

Last post by ted « Mon Aug 06, 2018 9:43 pm
Replies: 3
by shyam_u2 » Sun Aug 05, 2018 5:55 pm

3 Replies

765 Views

Last post by ted
Mon Aug 06, 2018 9:43 pm
Making a timer dummy cell for benchmarking

Last post by bcumming « Wed Jun 20, 2018 8:07 am
Replies: 3
by bcumming » Thu Jun 07, 2018 10:02 am

3 Replies

895 Views

Last post by bcumming
Wed Jun 20, 2018 8:07 am
firing frequency

Last post by ted « Fri May 04, 2018 12:53 pm
Replies: 3
by fabien tell » Fri May 04, 2018 8:07 am

3 Replies

1061 Views

Last post by ted
Fri May 04, 2018 12:53 pm
Three questions on extracellular stimulation and recording

Last post by luciana « Mon Mar 05, 2018 6:15 pm
Replies: 7
by luckychild » Fri Mar 31, 2017 12:54 pm

7 Replies

5918 Views

Last post by luciana
Mon Mar 05, 2018 6:15 pm
Direction of current in point process

Last post by cafischer « Wed Feb 07, 2018 4:34 am
Replies: 2
by cafischer » Tue Feb 06, 2018 3:43 pm

2 Replies

1063 Views

Last post by cafischer
Wed Feb 07, 2018 4:34 am
Rectifying Gap Junctions without using Linear Circuit Builder?

Last post by ted « Tue Jan 23, 2018 2:47 pm
Replies: 1
by varmaalok22 » Sun Jan 14, 2018 11:59 pm

1 Replies

679 Views

Last post by ted
Tue Jan 23, 2018 2:47 pm
Using Ca2+ currents in point and distributed processes

Last post by menica « Tue Dec 05, 2017 3:29 pm
Replies: 6
by hkur » Thu Mar 25, 2010 8:44 am

6 Replies

3808 Views

Last post by menica
Tue Dec 05, 2017 3:29 pm
Which libnrnmech.so file to load on linux/mac

Last post by ted « Mon Nov 27, 2017 12:02 pm
Replies: 3
by MBeining » Fri Nov 17, 2017 8:42 am

3 Replies

12095 Views

Last post by ted
Mon Nov 27, 2017 12:02 pm
pump kinetic scheme

Last post by menica « Fri Nov 17, 2017 10:00 am
Replies: 20
by jamie » Thu Jan 04, 2007 12:48 pm
1

2
20 Replies

29274 Views

Last post by menica
Fri Nov 17, 2017 10:00 am
Inconsistent behavior on modeling p2y2 Receptor

Last post by ted « Tue Nov 14, 2017 9:30 am
Replies: 3
by Archit » Mon Nov 06, 2017 12:03 am

3 Replies

13855 Views

Last post by ted
Tue Nov 14, 2017 9:30 am
NEURON's CVode method ignores conservation

Last post by ted « Sun Sep 24, 2017 2:57 pm
Replies: 1
by yan1982 » Fri Sep 22, 2017 6:47 pm

1 Replies

8981 Views

Last post by ted
Sun Sep 24, 2017 2:57 pm
Rounding error for function in derivative block

Last post by ted « Sun Sep 03, 2017 12:00 am
Replies: 6
by Tom Close » Fri Mar 13, 2015 7:56 pm

6 Replies

10186 Views

Last post by ted
Sun Sep 03, 2017 12:00 am
pass an array from hoc to a mod file

Last post by ted « Tue May 16, 2017 10:45 am
Replies: 1
by oren » Tue May 16, 2017 8:07 am

1 Replies

5366 Views

Last post by ted
Tue May 16, 2017 10:45 am
HCN channels modulation by cAMP

Last post by ted « Wed Mar 01, 2017 10:39 pm
Replies: 3
by mart » Wed Mar 01, 2017 6:01 am

3 Replies

5540 Views

Last post by ted
Wed Mar 01, 2017 10:39 pm
saving vectors to file

Last post by ted « Thu Feb 23, 2017 2:29 pm
Replies: 7
by fabien tell » Sun Feb 19, 2017 11:09 am

7 Replies

6572 Views

Last post by ted
Thu Feb 23, 2017 2:29 pm
Random maximal conductances in template

Last post by ted « Wed Feb 15, 2017 12:10 pm
Replies: 3
by lb5999 » Wed Feb 15, 2017 9:48 am

3 Replies

5607 Views

Last post by ted
Wed Feb 15, 2017 12:10 pm
Accessing a variable from hoc that is not defined in NMODL

Last post by ted « Sun Feb 12, 2017 3:56 pm
Replies: 5
by pascal » Fri Feb 10, 2017 10:19 am

5 Replies

6573 Views

Last post by ted
Sun Feb 12, 2017 3:56 pm
Time-varying maximal conductance

Last post by ted « Fri Feb 10, 2017 4:53 pm
Replies: 19
by lb5999 » Mon Jan 09, 2017 8:34 am
1

2
19 Replies

11585 Views

Last post by ted
Fri Feb 10, 2017 4:53 pm
Random Spikes

Last post by Samuel_30 « Thu Jan 26, 2017 9:36 pm
Replies: 6
by Samuel_30 » Tue Jan 24, 2017 10:41 pm

6 Replies

6147 Views

Last post by Samuel_30
Thu Jan 26, 2017 9:36 pm
How to set up large network of gap junction coupled cells

Last post by ted « Mon Jan 09, 2017 1:58 pm
Replies: 1
by lb5999 » Mon Jan 09, 2017 10:43 am

1 Replies

5437 Views

Last post by ted
Mon Jan 09, 2017 1:58 pm
Spatial discretization for radial diffusion of Ca

Last post by Darshan « Tue Dec 20, 2016 11:01 pm
Replies: 7
by Darshan » Fri May 06, 2016 2:38 am

7 Replies

6237 Views

Last post by Darshan
Tue Dec 20, 2016 11:01 pm
Transient potassium current as leak

Last post by ted « Wed Oct 12, 2016 2:50 pm
Replies: 1
by finesniper » Wed Oct 12, 2016 11:23 am

1 Replies

5030 Views

Last post by ted
Wed Oct 12, 2016 2:50 pm
Mechanosensitive channels

Last post by ted « Thu Sep 29, 2016 11:48 am
Replies: 1
by afc » Thu Sep 29, 2016 7:50 am

1 Replies

4997 Views

Last post by ted
Thu Sep 29, 2016 11:48 am
Temperature dependence with the Channel Builder

Last post by RBJ « Wed Sep 14, 2016 12:15 pm
Replies: 7
by joao » Thu Jan 15, 2009 12:10 pm

7 Replies

8776 Views

Last post by RBJ
Wed Sep 14, 2016 12:15 pm
Channel Builder Ion Permeability Ratios

Last post by RBJ « Thu Sep 08, 2016 1:31 pm
Replies: 13
by RBJ » Sun Aug 28, 2016 12:05 pm

13 Replies

7201 Views

Last post by RBJ
Thu Sep 08, 2016 1:31 pm
Trying to Make/Debug an Input Current Mod File

Last post by agmccrei « Mon Sep 05, 2016 10:07 pm
Replies: 1
by agmccrei » Wed Aug 17, 2016 12:49 am

1 Replies

5309 Views

Last post by agmccrei
Mon Sep 05, 2016 10:07 pm
How to NMODL?

Last post by pnainar « Fri Aug 26, 2016 12:19 pm
Replies: 8
by pnainar » Mon Aug 22, 2016 8:12 am

8 Replies

6393 Views

Last post by pnainar
Fri Aug 26, 2016 12:19 pm
Recorded conductance exceeding gbar value

Last post by ted « Tue Jul 05, 2016 11:45 pm
Replies: 3
by slerts » Tue Jul 05, 2016 8:55 pm

3 Replies

5483 Views

Last post by ted
Tue Jul 05, 2016 11:45 pm
Chapter 11.4 Interval Fire Mechanism Issue

Last post by 2015shanbhvi « Mon May 30, 2016 11:52 am
Replies: 2
by 2015shanbhvi » Fri May 27, 2016 6:04 pm

2 Replies

5514 Views

Last post by 2015shanbhvi
Mon May 30, 2016 11:52 am
Setting the basal level for Intracellular Calcium Concentrat

Last post by Darshan « Sat May 28, 2016 6:29 am
Replies: 22
by auatai » Wed Mar 10, 2010 2:39 am
1

2
22 Replies

14563 Views

Last post by Darshan
Sat May 28, 2016 6:29 am

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