NEURON design

Forum

Topics

Posts

Last post

NEURON + Python
When Python is the interpreter, what is a good
design for the interface to the basic NEURON
concepts.
Moderator: hines
Topics: 421

421 Topics

2136 Posts

Last post Re: Insert an ion channel wri…
by ted View the latest post
Fri Sep 30, 2022 4:13 am
Reaction-diffusion in NEURON
Extending NEURON to handle reaction-diffusion problems.
Moderators: hines, wwlytton, ramcdougal
Topics: 74

74 Topics

314 Posts

Last post Re: Reading species concentra…
by ramcdougal View the latest post
Mon Sep 19, 2022 3:05 pm

Active topics

Replies

Views

Last post

Use NEURON's native GUI tools with Python!

Last post by ted « Fri Sep 27, 2019 11:23 am
Replies: 2
by ted » Tue Aug 08, 2017 2:48 pm

2 Replies

15306 Views

Last post by ted
Fri Sep 27, 2019 11:23 am
More NEURON + Python documentation

Last post by ramcdougal « Wed Oct 24, 2018 7:07 am
Replies: 6
by ted » Mon Mar 24, 2008 10:17 am

6 Replies

27978 Views

Last post by ramcdougal
Wed Oct 24, 2018 7:07 am
More NEURON + Python resources

Last post by wjbeaver « Wed Dec 22, 2010 4:38 pm
Replies: 4
by mctavish » Wed Dec 01, 2010 3:13 pm

4 Replies

18702 Views

Last post by wjbeaver
Wed Dec 22, 2010 4:38 pm
Insert an ion channel written in a .mod file

Last post by ted « Fri Sep 30, 2022 4:13 am
Replies: 8
by cassiehu » Sun Sep 11, 2022 10:33 pm

8 Replies

127 Views

Last post by ted
Fri Sep 30, 2022 4:13 am
Reading species concentration in a MOD file using a list of species

Last post by ramcdougal « Mon Sep 19, 2022 3:05 pm
Replies: 1
by Tuoma » Mon Sep 19, 2022 7:33 am

1 Replies

42 Views

Last post by ramcdougal
Mon Sep 19, 2022 3:05 pm
Nstack - stack too deep in python

Last post by gabrielggn « Mon Sep 19, 2022 2:58 pm

by gabrielggn » Mon Sep 19, 2022 2:58 pm

0 Replies

35 Views

Last post by gabrielggn
Mon Sep 19, 2022 2:58 pm
Mining Code from Channel Builder

Last post by ted « Tue Sep 13, 2022 2:19 pm
Replies: 11
by BBAmp » Fri Mar 26, 2010 2:53 pm

11 Replies

4967 Views

Last post by ted
Tue Sep 13, 2022 2:19 pm
Accessing Pointers instantiated through Python

Last post by oitani « Thu Sep 01, 2022 3:39 pm
Replies: 6
by oitani » Wed Aug 10, 2022 1:12 pm

6 Replies

237 Views

Last post by oitani
Thu Sep 01, 2022 3:39 pm
POINTER is not thread safe

Last post by ted « Thu Aug 11, 2022 9:58 pm
Replies: 6
by alexandrapierri » Fri Aug 05, 2022 10:27 pm

6 Replies

478 Views

Last post by ted
Thu Aug 11, 2022 9:58 pm
mechanisms written in python?

Last post by ted « Wed Aug 03, 2022 2:34 pm
Replies: 5
by alexandrapierri » Mon Aug 01, 2022 9:24 pm

5 Replies

264 Views

Last post by ted
Wed Aug 03, 2022 2:34 pm
Recording synaptic currents

Last post by alexandrapierri « Wed Jul 27, 2022 6:16 pm
Replies: 4
by alexandrapierri » Mon Jul 25, 2022 1:34 pm

4 Replies

203 Views

Last post by alexandrapierri
Wed Jul 27, 2022 6:16 pm
rxd.Reaction(...) causes finitialize to not work

Last post by neuron121! « Wed Jul 27, 2022 1:06 pm
Replies: 1
by neuron121! » Mon Jul 25, 2022 7:53 pm

1 Replies

162 Views

Last post by neuron121!
Wed Jul 27, 2022 1:06 pm
Can the simulation results of Python and HOC be different?

Last post by virtualkss « Wed Jul 20, 2022 10:05 pm
Replies: 5
by virtualkss » Mon Jul 18, 2022 5:56 am

5 Replies

174 Views

Last post by virtualkss
Wed Jul 20, 2022 10:05 pm
Trouble using play method on Python with complex cells

Last post by gabrielggn « Thu Jul 07, 2022 4:00 am

by gabrielggn » Thu Jul 07, 2022 4:00 am

0 Replies

160 Views

Last post by gabrielggn
Thu Jul 07, 2022 4:00 am
Detection of MOD files in rxd.Region 'o'

Last post by malthe.nielsen « Mon Jul 04, 2022 2:47 am
Replies: 3
by malthe.nielsen » Thu May 26, 2022 2:30 am

3 Replies

481 Views

Last post by malthe.nielsen
Mon Jul 04, 2022 2:47 am
Minor typo in tutorial

Last post by ramcdougal « Mon Jun 13, 2022 3:56 pm
Replies: 1
by fietkiewicz » Mon Jun 13, 2022 3:45 pm

1 Replies

149 Views

Last post by ramcdougal
Mon Jun 13, 2022 3:56 pm
Mechanisms ignored when attempting to initialize events

Last post by pacificmadrone « Wed Jun 01, 2022 3:26 pm
Replies: 2
by pacificmadrone » Thu May 12, 2022 2:55 pm

2 Replies

676 Views

Last post by pacificmadrone
Wed Jun 01, 2022 3:26 pm
Uploading .swc file through .hoc

Last post by ted « Mon Apr 25, 2022 11:46 am
Replies: 3
by neuron121! » Sat Apr 02, 2022 2:13 pm

3 Replies

357 Views

Last post by ted
Mon Apr 25, 2022 11:46 am
Assignments in time and time-dependent functions

Last post by ramcdougal « Sat Apr 02, 2022 5:35 pm
Replies: 2
by duytanph » Wed Feb 16, 2022 6:40 pm

2 Replies

325 Views

Last post by ramcdougal
Sat Apr 02, 2022 5:35 pm
Problem plotting PlotShape

Last post by ted « Tue Mar 22, 2022 12:02 pm
Replies: 7
by fvarkevisser » Thu Sep 23, 2021 10:53 am

7 Replies

936 Views

Last post by ted
Tue Mar 22, 2022 12:02 pm
Using setpointer() and RXD concentrations

Last post by ramcdougal « Mon Mar 07, 2022 11:40 am
Replies: 3
by amerg » Mon Aug 26, 2019 6:16 pm

3 Replies

1825 Views

Last post by ramcdougal
Mon Mar 07, 2022 11:40 am
IClamp and ImpedanceRatio in python

Last post by rmaina « Tue Feb 15, 2022 2:12 pm
Replies: 2
by rmaina » Fri Feb 11, 2022 12:46 pm

2 Replies

409 Views

Last post by rmaina
Tue Feb 15, 2022 2:12 pm
Plotting Ca current through different types of VDCC's

Last post by adamjhn « Thu Feb 10, 2022 10:53 am
Replies: 6
by sangwonc » Mon Dec 06, 2021 6:40 pm

6 Replies

708 Views

Last post by adamjhn
Thu Feb 10, 2022 10:53 am
Different initial concentration and potential in different cells

Last post by adamjhn « Thu Feb 03, 2022 3:08 pm
Replies: 2
by Barbara » Tue Feb 01, 2022 9:32 am

2 Replies

281 Views

Last post by adamjhn
Thu Feb 03, 2022 3:08 pm
Shape plot update from Python

Last post by ted « Tue Feb 01, 2022 3:15 pm
Replies: 4
by ziemek » Mon Dec 02, 2019 1:22 pm

4 Replies

1853 Views

Last post by ted
Tue Feb 01, 2022 3:15 pm
Recording multiple netcon's weight with one synapse mechanism

Last post by ted « Fri Dec 31, 2021 11:11 am
Replies: 3
by dragon88hj » Thu Dec 30, 2021 1:58 am

3 Replies

361 Views

Last post by ted
Fri Dec 31, 2021 11:11 am
solving differential equation describing Vm

Last post by ted « Sat Dec 04, 2021 4:57 pm
Replies: 1
by finesniper » Fri Dec 03, 2021 5:07 pm

1 Replies

3424 Views

Last post by ted
Sat Dec 04, 2021 4:57 pm
How to refer to numeric value of crxd.v?

Last post by adamjhn « Tue Nov 23, 2021 3:00 pm
Replies: 3
by sangwonc » Wed Nov 17, 2021 6:33 pm

3 Replies

714 Views

Last post by adamjhn
Tue Nov 23, 2021 3:00 pm
hh.mod + Python + membrane potential at several points of the soma

Last post by ted « Tue Nov 16, 2021 12:01 pm
Replies: 5
by smetens » Wed Jun 09, 2021 11:09 am

5 Replies

1659 Views

Last post by ted
Tue Nov 16, 2021 12:01 pm
Time dependent NetCon weight

Last post by ted « Thu Nov 04, 2021 12:10 pm
Replies: 1
by ido4848 » Thu Nov 04, 2021 3:35 am

1 Replies

420 Views

Last post by ted
Thu Nov 04, 2021 12:10 pm
added a synapse with python

Last post by ted « Wed Nov 03, 2021 2:04 pm
Replies: 1
by OronKotler » Sun Oct 31, 2021 4:08 am

1 Replies

435 Views

Last post by ted
Wed Nov 03, 2021 2:04 pm
Adding a Rate to an Ion based on the flux of another Reaction function

Last post by adamjhn « Thu Oct 14, 2021 11:41 am
Replies: 1
by jetlim » Wed Oct 13, 2021 3:22 pm

1 Replies

5363 Views

Last post by adamjhn
Thu Oct 14, 2021 11:41 am
How to set spike detection threshold for pc.spike_record

Last post by Johannes « Thu Oct 14, 2021 9:40 am
Replies: 2
by Johannes » Wed Oct 13, 2021 6:03 am

2 Replies

3364 Views

Last post by Johannes
Thu Oct 14, 2021 9:40 am
Error running NEURON with embedded Python

Last post by ted « Wed Oct 13, 2021 12:37 pm
Replies: 3
by ttarnaud » Fri Dec 07, 2018 10:56 am

3 Replies

3939 Views

Last post by ted
Wed Oct 13, 2021 12:37 pm
problem instantiating a hoc template from python

Last post by ted « Sun Sep 19, 2021 1:25 am
Replies: 3
by alexandrapierri » Fri Sep 17, 2021 8:46 pm

3 Replies

661 Views

Last post by ted
Sun Sep 19, 2021 1:25 am
undefined symbol: nrnpython_start

Last post by Feanor « Fri Sep 17, 2021 10:57 am
Replies: 8
by Feanor » Mon Sep 13, 2021 4:25 pm

8 Replies

1130 Views

Last post by Feanor
Fri Sep 17, 2021 10:57 am
Using NEURON to model a system of endocrine cells

Last post by Robert Claar « Sat Aug 28, 2021 3:50 pm
Replies: 3
by Robert Claar » Tue Jun 30, 2020 2:58 pm

3 Replies

1477 Views

Last post by Robert Claar
Sat Aug 28, 2021 3:50 pm
Import3d tool via Jupyter

Last post by landoskape « Fri Aug 27, 2021 6:49 pm
Replies: 2
by landoskape » Thu Aug 12, 2021 11:37 am

2 Replies

638 Views

Last post by landoskape
Fri Aug 27, 2021 6:49 pm
Pass ._ref_concentration to pc.source_var()?

Last post by itaru « Tue Aug 03, 2021 3:55 am
Replies: 6
by itaru » Thu Jul 15, 2021 8:57 am

6 Replies

2443 Views

Last post by itaru
Tue Aug 03, 2021 3:55 am
Preproducing updating PlotShape() figures in

Last post by ramcdougal « Wed Jul 28, 2021 6:11 am
Replies: 1
by RBJ » Wed Jul 28, 2021 5:54 am

1 Replies

954 Views

Last post by ramcdougal
Wed Jul 28, 2021 6:11 am
Exporting .ses from Linear Circuit Builder

Last post by ted « Thu Jul 22, 2021 1:41 pm
Replies: 1
by ckelley » Mon Jul 19, 2021 1:02 pm

1 Replies

705 Views

Last post by ted
Thu Jul 22, 2021 1:41 pm
RxD code performance

Last post by itaru « Tue Jul 06, 2021 7:05 pm

by itaru » Tue Jul 06, 2021 7:05 pm

0 Replies

1166 Views

Last post by itaru
Tue Jul 06, 2021 7:05 pm
RxD with ParallelContext

Last post by itaru « Mon Jul 05, 2021 2:51 am
Replies: 3
by itaru » Sun Jun 27, 2021 4:08 am

3 Replies

631 Views

Last post by itaru
Mon Jul 05, 2021 2:51 am
Question about: example calcium wave

Last post by itaru « Thu Jul 01, 2021 1:09 am
Replies: 1
by itaru » Wed Jun 30, 2021 5:56 am

1 Replies

382 Views

Last post by itaru
Thu Jul 01, 2021 1:09 am
Using h.APCount with the extracellular mechanism

Last post by ted « Sat Jun 26, 2021 12:13 am
Replies: 1
by andrewq » Fri Jun 25, 2021 4:27 pm

1 Replies

551 Views

Last post by ted
Sat Jun 26, 2021 12:13 am
Why does this Python Hoc Cell Instantiation from Hoc with getattr() work after adding (morpho_path) behind.

Last post by watersun « Sun Jun 20, 2021 12:00 pm

by watersun » Sun Jun 20, 2021 12:00 pm

0 Replies

737 Views

Last post by watersun
Sun Jun 20, 2021 12:00 pm
silencing netstim during simulation.

Last post by alexandrapierri « Tue May 11, 2021 9:43 am
Replies: 2
by alexandrapierri » Mon May 10, 2021 9:51 pm

2 Replies

798 Views

Last post by alexandrapierri
Tue May 11, 2021 9:43 am
Correcting poor code design

Last post by ted « Mon May 03, 2021 4:05 pm
Replies: 3
by aliaped » Mon May 03, 2021 10:39 am

3 Replies

1066 Views

Last post by ted
Mon May 03, 2021 4:05 pm
Glutamate in the synaptic cleft

Last post by adamjhn « Tue Apr 27, 2021 10:07 am
Replies: 1
by srmainz » Mon Apr 26, 2021 4:53 am

1 Replies

706 Views

Last post by adamjhn
Tue Apr 27, 2021 10:07 am
Assigning values to a mechanism over all sections in anatomically detailed model

Last post by aliaped « Mon Apr 26, 2021 10:25 am
Replies: 3
by aliaped » Mon Apr 12, 2021 10:30 am

3 Replies

954 Views

Last post by aliaped
Mon Apr 26, 2021 10:25 am

Return to Board Index