NEURON + Python

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Last post

Playing a vector into a linear mechanism from python

Last post by ted « Tue Apr 28, 2015 10:28 am
Replies: 4
by basjanzandt » Thu Apr 23, 2015 4:26 am

4 Replies

2712 Views

Last post by ted
Tue Apr 28, 2015 10:28 am
Error on loading the SWC file using neuron

Last post by ted « Sun Apr 26, 2015 5:25 pm
Replies: 2
by dilawar » Sat Apr 25, 2015 2:14 pm

2 Replies

2147 Views

Last post by ted
Sun Apr 26, 2015 5:25 pm
h.FInitializeHandler Crashing

Last post by bscoventry « Mon Mar 23, 2015 11:03 am
Replies: 5
by bscoventry » Tue Mar 17, 2015 11:17 am

5 Replies

2443 Views

Last post by bscoventry
Mon Mar 23, 2015 11:03 am
MWE for apparent bug discovered by PyNN format

Last post by Tom Close « Fri Mar 13, 2015 7:47 pm
Replies: 4
by Tom Close » Tue Mar 10, 2015 10:44 pm

4 Replies

3009 Views

Last post by Tom Close
Fri Mar 13, 2015 7:47 pm
SWC files

Last post by Kolorek « Tue Mar 10, 2015 5:37 pm
Replies: 33
by Kolorek » Mon Feb 02, 2015 5:26 am
1

2

3
33 Replies

20249 Views

Last post by Kolorek
Tue Mar 10, 2015 5:37 pm
substitute stadard init() precedure from Python

Last post by rth « Thu Feb 26, 2015 10:57 am
Replies: 2
by rth » Wed Feb 25, 2015 5:10 pm

2 Replies

2146 Views

Last post by rth
Thu Feb 26, 2015 10:57 am
Increase stacksize from python?

Last post by ramcdougal « Thu Feb 19, 2015 12:28 pm
Replies: 2
by aaronmil » Thu Feb 19, 2015 11:34 am

2 Replies

2209 Views

Last post by ramcdougal
Thu Feb 19, 2015 12:28 pm
Compiling NEURON/Python

Last post by bscoventry « Mon Feb 16, 2015 4:00 pm
Replies: 4
by bscoventry » Sun Feb 15, 2015 9:51 pm

4 Replies

2180 Views

Last post by bscoventry
Mon Feb 16, 2015 4:00 pm
Strange behavior Updating HOC Vectors inside Python+mpi deff

Last post by R_Jarvis « Mon Jan 26, 2015 7:27 pm
Replies: 3
by R_Jarvis » Thu Jan 22, 2015 8:31 pm

3 Replies

2133 Views

Last post by R_Jarvis
Mon Jan 26, 2015 7:27 pm
how to save a segment list in a pkl file

Last post by hines « Sat Jan 24, 2015 8:05 am
Replies: 2
by tine » Wed Jan 21, 2015 12:43 pm

2 Replies

2061 Views

Last post by hines
Sat Jan 24, 2015 8:05 am
Running multiple simulations in one process

Last post by hines « Wed Jan 07, 2015 1:20 am
Replies: 19
by lcampagn » Tue Oct 28, 2014 2:17 pm
1

2
19 Replies

14105 Views

Last post by hines
Wed Jan 07, 2015 1:20 am
record from one cell of a matrix to a vector

Last post by oren « Thu Dec 25, 2014 5:39 am
Replies: 4
by oren » Mon Dec 22, 2014 9:38 am

4 Replies

2261 Views

Last post by oren
Thu Dec 25, 2014 5:39 am
What sets the sys.path for nrniv -python?

Last post by hines « Sun Dec 14, 2014 12:56 am
Replies: 5
by aaronmil » Thu Dec 11, 2014 4:44 pm

5 Replies

3520 Views

Last post by hines
Sun Dec 14, 2014 12:56 am
generate dictionary of hoc (h.) things

Last post by wwlytton « Fri Nov 21, 2014 5:09 pm
Replies: 1
by wwlytton » Fri Nov 21, 2014 5:00 pm

1 Replies

2040 Views

Last post by wwlytton
Fri Nov 21, 2014 5:09 pm
Neuron and Python stim-response error

Last post by ted « Wed Nov 19, 2014 10:21 pm
Replies: 1
by tmczhangtielin » Wed Nov 19, 2014 10:42 am

1 Replies

1694 Views

Last post by ted
Wed Nov 19, 2014 10:21 pm
Bulletin Board Style

Last post by wwlytton « Thu Nov 13, 2014 10:10 am
Replies: 11
by Ruben Moor » Tue Nov 17, 2009 9:10 am

11 Replies

7097 Views

Last post by wwlytton
Thu Nov 13, 2014 10:10 am
Reference leak when using PointProcess.get_segment()

Last post by hines « Tue Nov 11, 2014 7:46 am
Replies: 1
by lcampagn » Sun Nov 09, 2014 7:12 pm

1 Replies

1478 Views

Last post by hines
Tue Nov 11, 2014 7:46 am
Setpointer when defining a synapse

Last post by Manni « Mon Nov 10, 2014 3:52 am
Replies: 2
by Manni » Thu Oct 30, 2014 10:14 am

2 Replies

3913 Views

Last post by Manni
Mon Nov 10, 2014 3:52 am
A pythonic API for NEURON

Last post by lcampagn « Mon Nov 03, 2014 12:31 pm
Replies: 2
by lcampagn » Tue Oct 28, 2014 1:44 pm

2 Replies

1892 Views

Last post by lcampagn
Mon Nov 03, 2014 12:31 pm
Confused about accessing segments in Python

Last post by lcampagn « Fri Oct 24, 2014 11:17 am
Replies: 2
by lcampagn » Thu Oct 23, 2014 3:09 pm

2 Replies

2412 Views

Last post by lcampagn
Fri Oct 24, 2014 11:17 am
Minor bug: uncaught python error condition

Last post by hines « Fri Oct 24, 2014 1:43 am
Replies: 1
by lcampagn » Thu Oct 23, 2014 2:43 pm

1 Replies

1315 Views

Last post by hines
Fri Oct 24, 2014 1:43 am
Simple function to add synapses

Last post by ahwillia « Fri Oct 17, 2014 2:00 am
Replies: 8
by ahwillia » Thu Oct 09, 2014 9:23 pm

8 Replies

5174 Views

Last post by ahwillia
Fri Oct 17, 2014 2:00 am
Accessing synapses on a section

Last post by sgratiy « Thu Oct 02, 2014 4:23 pm
Replies: 3
by sgratiy » Wed Oct 01, 2014 8:59 pm

3 Replies

2168 Views

Last post by sgratiy
Thu Oct 02, 2014 4:23 pm
Changing hoc variables after xopen but before instantiation

Last post by dopadelic « Sat Aug 09, 2014 8:20 pm
Replies: 3
by dopadelic » Thu Aug 07, 2014 6:13 pm

3 Replies

3053 Views

Last post by dopadelic
Sat Aug 09, 2014 8:20 pm
Section stack overflow

Last post by ted « Mon Aug 04, 2014 2:50 pm
Replies: 7
by ssalgado » Wed Jul 23, 2014 1:58 pm

7 Replies

4608 Views

Last post by ted
Mon Aug 04, 2014 2:50 pm
Neuron and Python, NetCon Error

Last post by tmczhangtielin « Sun Aug 03, 2014 8:53 am
Replies: 2
by tmczhangtielin » Sat Aug 02, 2014 12:13 pm

2 Replies

2686 Views

Last post by tmczhangtielin
Sun Aug 03, 2014 8:53 am
A Python interface for NEURON using ctypes

Last post by lcampagn « Mon Jul 07, 2014 8:43 pm
Replies: 2
by lcampagn » Mon Jul 07, 2014 6:19 pm

2 Replies

1803 Views

Last post by lcampagn
Mon Jul 07, 2014 8:43 pm
Playing vector into SEClamp

Last post by Tom Close « Sun Jun 29, 2014 5:35 am
Replies: 4
by tab » Mon Oct 28, 2013 3:26 pm

4 Replies

3348 Views

Last post by Tom Close
Sun Jun 29, 2014 5:35 am
Segfault when running long simulation with many neurons

Last post by ramcdougal « Thu Jun 26, 2014 4:29 pm
Replies: 3
by jgosmann » Wed Jun 25, 2014 12:35 pm

3 Replies

2913 Views

Last post by ramcdougal
Thu Jun 26, 2014 4:29 pm
to_python() causes big memory problems

Last post by hines « Thu Jun 19, 2014 10:47 am
Replies: 8
by arb » Wed Sep 17, 2008 5:43 pm

8 Replies

5604 Views

Last post by hines
Thu Jun 19, 2014 10:47 am
Creating an array of membrane currents

Last post by sgratiy « Mon Jun 16, 2014 4:09 pm
Replies: 8
by sgratiy » Tue Jun 10, 2014 1:14 pm

8 Replies

4129 Views

Last post by sgratiy
Mon Jun 16, 2014 4:09 pm
[PATCH] Fix nrnpython_getline signature

Last post by csh « Sat May 17, 2014 6:44 am

by csh » Sat May 17, 2014 6:44 am

0 Replies

1654 Views

Last post by csh
Sat May 17, 2014 6:44 am
Accessing segment area

Last post by sgratiy « Thu May 15, 2014 1:02 pm
Replies: 2
by sgratiy » Tue May 13, 2014 6:53 pm

2 Replies

2044 Views

Last post by sgratiy
Thu May 15, 2014 1:02 pm
Accessing all sections of a particular cell from a list

Last post by ted « Tue May 13, 2014 6:01 pm
Replies: 1
by sgratiy » Tue May 13, 2014 3:41 pm

1 Replies

2301 Views

Last post by ted
Tue May 13, 2014 6:01 pm
Cannot access range variable from external mechanism

Last post by sgratiy « Fri May 09, 2014 8:55 pm
Replies: 2
by sgratiy » Thu May 08, 2014 7:02 pm

2 Replies

1905 Views

Last post by sgratiy
Fri May 09, 2014 8:55 pm
creating independent instances of a cell object

Last post by hines « Fri May 09, 2014 2:46 pm
Replies: 1
by Nin » Fri May 09, 2014 8:39 am

1 Replies

1362 Views

Last post by hines
Fri May 09, 2014 2:46 pm
Having python read from a NEURON binary file

Last post by ted « Thu May 08, 2014 1:17 pm
Replies: 7
by Annik » Mon May 05, 2014 5:02 pm

7 Replies

5019 Views

Last post by ted
Thu May 08, 2014 1:17 pm
Recording changes in Impedance in NEURON (Python)

Last post by ted « Thu May 01, 2014 4:04 pm
Replies: 14
by gary » Thu Jan 24, 2013 12:15 pm

14 Replies

7450 Views

Last post by ted
Thu May 01, 2014 4:04 pm
Getting parents until soma

Last post by ted « Mon Apr 28, 2014 10:06 am
Replies: 1
by Nin » Sun Apr 27, 2014 3:44 pm

1 Replies

2038 Views

Last post by ted
Mon Apr 28, 2014 10:06 am
NEURON does not compile with Python 3.4

Last post by lneisenman « Tue Apr 22, 2014 11:08 am
Replies: 2
by lneisenman » Mon Apr 21, 2014 10:48 am

2 Replies

2022 Views

Last post by lneisenman
Tue Apr 22, 2014 11:08 am
Exponential overflow error

Last post by ted « Wed Apr 09, 2014 10:16 am
Replies: 1
by maxwellphenderson » Wed Apr 09, 2014 9:33 am

1 Replies

2054 Views

Last post by ted
Wed Apr 09, 2014 10:16 am
Accessing segment diameter

Last post by hines « Fri Mar 14, 2014 10:52 am
Replies: 4
by budd » Wed Mar 12, 2014 8:51 pm

4 Replies

3920 Views

Last post by hines
Fri Mar 14, 2014 10:52 am
reset NEURON

Last post by romain.caze « Fri Feb 28, 2014 12:17 pm
Replies: 10
by btorb » Mon Aug 08, 2011 3:03 am

10 Replies

7035 Views

Last post by romain.caze
Fri Feb 28, 2014 12:17 pm
Section object created in python partially existing in hoc

Last post by hines « Tue Feb 18, 2014 9:37 am
Replies: 1
by romain.caze » Mon Feb 17, 2014 11:51 am

1 Replies

3040 Views

Last post by hines
Tue Feb 18, 2014 9:37 am
Obtaining a segmentation fault using neuron

Last post by hines « Tue Feb 18, 2014 7:36 am
Replies: 11
by romain.caze » Tue Feb 11, 2014 5:17 am

11 Replies

5790 Views

Last post by hines
Tue Feb 18, 2014 7:36 am
possible memory leak with random in python3

Last post by lneisenman « Fri Jan 10, 2014 10:18 am
Replies: 5
by lneisenman » Fri Nov 22, 2013 10:43 am

5 Replies

2795 Views

Last post by lneisenman
Fri Jan 10, 2014 10:18 am
Speed: why running in Python is MUCH slower as in GUI ???

Last post by figoyouwei « Mon Dec 23, 2013 12:55 am
Replies: 2
by figoyouwei » Fri Dec 20, 2013 3:41 pm

2 Replies

1746 Views

Last post by figoyouwei
Mon Dec 23, 2013 12:55 am
nrnpython+matplotlib gui thread hangs

Last post by ramcdougal « Tue Dec 17, 2013 7:47 pm
Replies: 1
by samnemo » Sat Dec 14, 2013 11:15 am

1 Replies

4101 Views

Last post by ramcdougal
Tue Dec 17, 2013 7:47 pm
no subscripting of SectionList in python

Last post by wwlytton « Sun Dec 08, 2013 11:45 am

by wwlytton » Sun Dec 08, 2013 11:45 am

0 Replies

1541 Views

Last post by wwlytton
Sun Dec 08, 2013 11:45 am
append sections to sectionlist

Last post by ted « Mon Oct 28, 2013 7:18 pm
Replies: 3
by ioannisv » Mon Oct 28, 2013 12:58 pm

3 Replies

2247 Views

Last post by ted
Mon Oct 28, 2013 7:18 pm

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