Search found 6 matches

by ssalgado
Wed Sep 03, 2014 1:16 pm
Forum: Anatomically detailed models
Topic: Insert point processes in a Starburst Cell model
Replies: 1
Views: 6223

Insert point processes in a Starburst Cell model

I'm trying to model a Starburst Amacrine Cell receiving inputs from bipolar cells. I've done this before in a simplified model of a neuron with 4 perpendicular dendrites. I create a circular grid of bipolar inputs and then, based on the distance and angle, I determine over which dendrites the inputs...
by ssalgado
Mon Aug 04, 2014 11:29 am
Forum: NEURON + Python
Topic: Section stack overflow
Replies: 7
Views: 4313

Re: Section stack overflow

Great, specifying sec=soma worked smoothly.
Also, the article regarding pythonic was quite interesting. I'm new to programming and I realize that is a little hard for me to think in a non-pythonic way, so I get a hard time understanding HOC code.
Thanks :)
by ssalgado
Thu Jul 24, 2014 2:13 pm
Forum: NEURON + Python
Topic: Section stack overflow
Replies: 7
Views: 4313

Re: Section stack overflow

Well thanks for the replies. I've already tried the solutions mentioned above. I don't get a stack overflow, but the voltage traces are far from what I expected. I'll share the piece of code that creates the neuron and gives the right voltage traces. Generacion de la SAC #Soma soma = h.Section() som...
by ssalgado
Wed Jul 23, 2014 1:58 pm
Forum: NEURON + Python
Topic: Section stack overflow
Replies: 7
Views: 4313

Section stack overflow

Hi. I'm running a simulation to see how some parameters affect the output of a neuron. I wrote the simulation code in python under a def statement simulation(). However, when I run the simulation multiple times on the same script I get a section stack overflow error. I've tried unsuccessfully to del...
by ssalgado
Tue Apr 29, 2014 12:06 pm
Forum: UNIX/Linux
Topic: Error compiling in Ubuntu 14.04
Replies: 13
Views: 9893

Re: Error compiling in Ubuntu 14.04

Start over with a fresh clone and hg update ansi That will give you the latest 7.3 version. The 7.4 trunk requires cython to construct graphicsPrimitives.cpp and a few others (a tar.gz distribution has these included). I thought that the configure would give an error message and stop in this case b...
by ssalgado
Mon Apr 28, 2014 2:23 pm
Forum: UNIX/Linux
Topic: Error compiling in Ubuntu 14.04
Replies: 13
Views: 9893

Re: Error compiling in Ubuntu 14.04

Ok, I deleted everything and installed the latest source through hg clone. Now it doesn't promt the above mentioned error, and it looks to go through make and make install. However, when attempting to make neuron a python module using cd src/nrnpython python setup.py install it gives the following e...