Search found 7 matches

by cengique
Thu May 24, 2018 2:05 pm
Forum: NEURON + Python
Topic: Python NEURON
Replies: 15
Views: 16905

Re: Python NEURON

http://www.neuron.yale.edu/ftp/neuron/versions/alpha/nrn-7.5.master-1612.w64-mingw-py-36-35-27-setup.exe automates the determination of NRN_PYLIB when a bash terminal is started. Unfortunately, I have been unable to determine why 'import rxd' fails with anaconda python 3.5. Further diagnosis will r...
by cengique
Sun Dec 17, 2017 7:50 pm
Forum: UNIX/Linux
Topic: Neuron 7.5-2 on Manjaro Linux shows no UI elements
Replies: 2
Views: 2346

Re: Neuron 7.5-2 on Manjaro Linux shows no UI elements

Update: I was able to install from source and it works fine on Manjaro.
by cengique
Sat Dec 16, 2017 8:36 pm
Forum: UNIX/Linux
Topic: Neuron 7.5-2 on Manjaro Linux shows no UI elements
Replies: 2
Views: 2346

Neuron 7.5-2 on Manjaro Linux shows no UI elements

Hi, I installed Neuron 7.5-2 from the AUR package repositories in my Manjaro Linux (and Arch-based distro, with kernel 3.18.84-1). It compiles and installs without errors, and I can run nrniv or nrgui, but no windows pop up. I also installed Interviews, but with or without it I still can't pop up an...
by cengique
Mon Jun 13, 2011 6:52 pm
Forum: Other questions
Topic: Questions on Linear Circuit Builder
Replies: 8
Views: 3588

Re: Questions on Linear Circuit Builder

Making mistakes is easy. The hard part is finding one's own mistake and fixing it. Thanks for following up with the diagnosis and fix. Sure :) By the way, if soma is the default section and nseg is 1, you can use hoc's area() function in your graph--plot 0.01*area(0.5)*i_pas(0.5) and you won't have...
by cengique
Fri Jun 10, 2011 6:28 pm
Forum: Other questions
Topic: Questions on Linear Circuit Builder
Replies: 8
Views: 3588

Found it!

It was only one more thing to fix: I had radius instead of diameter in the soma diam parameter. :( Correcting it to 2*5 um = 10 um gave me matching VC_I and soma.i_pas! Thanks again, Ted.
-Cengiz
by cengique
Fri Jun 10, 2011 6:05 pm
Forum: Other questions
Topic: Questions on Linear Circuit Builder
Replies: 8
Views: 3588

Re: Questions on Linear Circuit Builder

It's good to see someone using the Linear Circuit Builder. Great! So, I'm not totally on the wrong track. And I really appreciate the quick reply! :) Comments on the equivalent circuit for an electrode: 1. Ce will have no effect on membrane potential when the junction of Ce and Re is driven by a vo...
by cengique
Fri Jun 10, 2011 3:15 pm
Forum: Other questions
Topic: Questions on Linear Circuit Builder
Replies: 8
Views: 3588

Re: Questions on Linear Circuit Builder

Hello, I have been trying to use the LinerCircuit to simulate electrode capacitance (Ce) and series resistance (Re) properties, but I'm having problems. I am not sure if this is the most direct way of doing this, but I built the simple circuit below that is attached to a single compartmental soma mo...