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Dear all, I am running a simulation, where among others the voltage of different dendrite segments is calculated and saved in a pkl file. This is all done in the main.py file. Afterwards the analysis.py script opens this pkl script, and analyses the data and makes figures. This all worked fine, but ...

thanks

dear all,

I have a model which contains both axons and dendrites and a soma. For demonstration purposes I want to make a shapeplot of soma and dendrites only. Does any body has any suggestions how to do this?

thanks

I am not sure if it is possible to have them both simultaneously. If I have the most simple model, namely only soma, load_file("nrngui.hoc") create soma soma.nseg=1 soma.diam=20 soma.L=20 soma.Ra=123 insert hh objectvar elec_Iclamp soma elec_Iclamp= new IClamp(0.5) elec_Iclamp.amp=0.1 elec...

Dear Ted, Thanks for your quick response. I conceptually understand your solution but I end up with SEClamp.i=0. Can you help me where my error is? I inserted an Iclamp to insert tonic current step objectvar stim300 apic[14] stim300 = new IClamp(0.36) stim300.del = 50 stim300.dur = 200 stim300.amp =...

Dear all, For a demonstration I want to show the attenuation of a tonic currents at some specific locations in the dendrites to the soma. My plan of action is - insert Iclamp at a specific location of the dendrites (for example 100 microm) and insert a long step of 10 pA - measure currents at the so...

Oops, I must have clicked on the "edit" button, not the "reply" button. Sorry! Your original procedure was proc shape3d_1() { soma { pt3dclear() pt3dadd(3.99799, -13.8169, 0, 3.78114) pt3dadd(3.6609, -12.5621, 0, 6.52282) pt3dadd(3.32381, -11.3073, 0, 9.30135) pt3dadd(2.98671, -1...

Dear all,

I would like to add a scalebar in my shapeplot before exporting it to a postscript. How could I do this?

Thanks a lot, Martine

Thanks a lot for the answers. Your answer to the second question was easy to implement and is working fine. For the first question, saving the data in a big matrix, I still have some difficulties. objref savdata2,tempmatrix2 proc open_outputfile_RangeVar(){ tempmatrix2=new Matrix() tempmatrix2.resiz...

Dear all, I have two questions relating Rangevar. 1) I want to save the values plotted in the rangevar plot into a data file, using hoc coding. Currently I have this piece of code: before run() and after defining the cell's morphology and electrophysiology // Make range variable and put it into vect...