init.c File Reference

#include <../../nrnconf.h>
#include <nrnmpiuse.h>
#include <stdio.h>
#include <stdlib.h>
#include "section.h"
#include "parse.h"
#include "membfunc.h"
#include "cabvars.h"
#include "neuron.h"
#include "membdef.h"
#include "nrnmpi.h"

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Classes
struct	Member_func
Defines
#define	CHECK(name)
Typedefs
typedef void(*	Pfrv )()
Functions
char *	nrn_version ()
Symbol *	hoc_table_lookup ()
void	add_nrn_has_net_event (int type)
void	add_nrn_fornetcons (int type, int indx)
void	add_nrn_artcell (int type, int qi)
int	nrn_is_artificial (int pnttype)
int	nrn_is_cable ()
	hoc_nrn_load_dll ()
void	nrn_threads_create (int)
	hoc_last_init ()
	initnrn ()
	register_mech (char **m, Pfri alloc, Pfri cur, Pfri jacob, Pfri stat, Pfri initialize, int nrnpointerindex, vectorized)
	nrn_writes_conc (int type, int unused)
void	hoc_register_dparam_size (int type, int size)
	register_destructor (Pfri d)
int	point_reg_helper (Symbol *s2)
	_modl_cleanup ()
	_modl_set_dt (double newdt)
	_modl_set_dt_thread (double newdt, NrnThread *nt)
double	_modl_get_dt_thread (NrnThread *nt)
int	nrn_pointing (double *pd)
	state_discontinuity (int i, double *pd, double d)
	hoc_register_limits (int type, HocParmLimits *limits)
	hoc_register_units (int type, HocParmUnits *units)
	hoc_reg_ba (int mt, Pfri f, int type)
	_cvode_abstol (Symbol *s, double tol, int i)
	hoc_register_tolerance (int type, HocStateTolerance tol, Symbol **stol)
void	_nrn_thread_reg (int i, int cons, void(f)(Datum ))
void	_nrn_thread_table_reg (int i, void(f)(double , Datum , Datum , void *, int))
Variables
Symlist *	hoc_symlist
Symlist *	hoc_built_in_symlist
void(*	nrnpy_reg_mech_p_ )(int)
int	secondorder = 0
int	state_discon_allowed_
int	nrn_nobanner_
double	t
double	dt
double	clamp_resist
double	celsius
double	htablemin
double	htablemax
hoc_List *	section_list
int	nrn_global_ncell = 0
double	hoc_default_dll_loaded_
int	nrn_istty_
Memb_func *	memb_func
Memb_list *	memb_list
short *	memb_order_
Symbol **	pointsym
Point_process **	point_process
char *	pnt_map
BAMech **	bamech_
Template **	nrn_pnt_template_
Pfrv *	pnt_receive
Pfrv *	pnt_receive_init
short *	pnt_receive_size
int	nrn_has_net_event_cnt_
int *	nrn_has_net_event_
int *	nrn_prop_dparam_size_
int *	nrn_dparam_ptr_start_
int *	nrn_dparam_ptr_end_
int	nrn_fornetcon_cnt_
int *	nrn_fornetcon_type_
int *	nrn_fornetcon_index_
short *	nrn_is_artificial_
short *	nrn_artcell_qindex_
int	n_memb_func
int int	_ninits
int	state_discon_flag_ = 0

Define Documentation

#define CHECK ( name )

Value:

if (hoc_lookup(name) != (Symbol *)0){\
      IGNORE(fprintf(stderr, CHKmes, name));\
      nrn_exit(1);}

Typedef Documentation

typedef void(* Pfrv)()

Function Documentation

_cvode_abstol	(	Symbol**	s,
		double*	tol,
		int	i
	)

References x.

_modl_cleanup ( )

double _modl_get_dt_thread ( NrnThread * nt )

References NrnThread::_dt.

_modl_set_dt ( double newdt )

References NrnThread::_dt, dt, and nrn_threads.

_modl_set_dt_thread	(	double	newdt,
		NrnThread *	nt
	)

References NrnThread::_dt.

void _nrn_thread_reg	(	int	i,
		int	cons,
		void()(Datum )	f
	)

References Memb_func::_update_ion_pointers, Memb_func::thread_cleanup_, and Memb_func::thread_mem_init_.

Referenced by _hh_reg_().

void _nrn_thread_table_reg	(	int	i,
		void()(double , Datum , Datum , void *, int)	f
	)

References Memb_func::thread_table_check_.

Referenced by _hh_reg_().

void add_nrn_artcell	(	int	type,
		int	qi
	)

References nrn_artcell_qindex_, and nrn_is_artificial_.

Referenced by _intfire1_reg_(), _intfire2_reg_(), _intfire4_reg_(), _netstim_reg_(), and _pattern_reg_().

void add_nrn_fornetcons	(	int	type,
		int	indx
	)

References erealloc, i, int, nrn_fornetcon_cnt_, nrn_fornetcon_index_, and nrn_fornetcon_type_.

void add_nrn_has_net_event ( int type )

References erealloc, nrn_has_net_event_, and nrn_has_net_event_cnt_.

Referenced by _intfire1_reg_(), _intfire2_reg_(), _intfire4_reg_(), and _netstim_reg_().

hoc_last_init ( )

hoc_nrn_load_dll ( )

References expand_env_var(), gargstr(), hoc_warning(), i, and ret.

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hoc_reg_ba	(	int	mt,
		Pfri	f,
		int	type
	)

References AFTER_INITIAL, AFTER_SOLVE, BEFORE_BREAKPOINT, BEFORE_INITIAL, BEFORE_STEP, emalloc, BAMech::f, BAMech::next, nrn_exit(), and BAMech::type.

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void hoc_register_dparam_size	(	int	type,
		int	size
	)

References nrn_prop_dparam_size_.

Referenced by _apcount_reg_(), _exp2syn_reg_(), _expsyn_reg_(), _hh_reg_(), _intfire1_reg_(), _intfire2_reg_(), _intfire4_reg_(), _netstim_reg_(), _oclmp_reg_(), _passive_reg_(), _pattern_reg_(), _ppmark_reg_(), _stim_reg_(), _svclmp_reg_(), _syn_reg_(), _vclmp_reg_(), and _xmech_reg_().

hoc_register_limits	(	int	type,
		HocParmLimits*	limits
	)

References hoc_lookup(), hoc_symbol_limits(), hoc_table_lookup(), i, name, Symbol::name, HocParmLimits::name, t, Symbol::template, and Symbol::u.

Referenced by _apcount_reg_(), _exp2syn_reg_(), _expsyn_reg_(), _hh_reg_(), _intfire1_reg_(), _intfire2_reg_(), _intfire4_reg_(), _netstim_reg_(), _oclmp_reg_(), _passive_reg_(), _pattern_reg_(), _ppmark_reg_(), _stim_reg_(), _svclmp_reg_(), _syn_reg_(), _vclmp_reg_(), _xmech_reg_(), and hoc_last_init().

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hoc_register_tolerance	(	int	type,
		HocStateTolerance*	tol,
		Symbol***	stol
	)

References Symbol::arayinfo, assert, Prop::dparam, ecalloc, hoc_lookup(), hoc_symbol_tolerance(), hoc_table_lookup(), i, index, ISARRAY, MORPHOLOGY, n, name, Symbol::name, HocStateTolerance::name, Prop::next, node_construct(), node_destruct(), Prop::param, Prop::param_size, Symbol::ppsym, prop, prop_alloc(), Symbol::rng, Symbol::s_varn, Arrayinfo::sub, Memb_func::sym, t, Symbol::template, Symbol::type, Prop::type, and Symbol::u.

Referenced by _exp2syn_reg_(), _expsyn_reg_(), and _hh_reg_().

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hoc_register_units	(	int	type,
		HocParmUnits*	units
	)

References hoc_lookup(), hoc_symbol_units(), hoc_table_lookup(), i, name, Symbol::name, HocParmUnits::name, t, Symbol::template, and Symbol::u.

Referenced by _apcount_reg_(), _exp2syn_reg_(), _expsyn_reg_(), _hh_reg_(), _intfire1_reg_(), _intfire2_reg_(), _intfire4_reg_(), _netstim_reg_(), _oclmp_reg_(), _passive_reg_(), _pattern_reg_(), _ppmark_reg_(), _stim_reg_(), _svclmp_reg_(), _syn_reg_(), _vclmp_reg_(), _xmech_reg_(), and hoc_last_init().

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Symbol* hoc_table_lookup ( )

initnrn ( )

References celsius, clamp_resist, DEF_celsius, DEF_clamp_resist, DEF_dt, DEF_secondorder, dt, ret, secondorder, and t.

int nrn_is_artificial ( int pnttype )

References nrn_is_artificial_, and Symbol::subtype.

int nrn_is_cable ( )

int nrn_pointing ( double * pd )

void nrn_threads_create ( int )

Referenced by hoc_last_init().

char* nrn_version ( )

nrn_writes_conc	(	int	type,
		int	unused
	)

References i, memb_order_, and nrn_is_ion().

Referenced by ion_reg().

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int point_reg_helper ( Symbol* s2 )

References Memb_func::is_point, nrnpy_reg_mech_p_, pnt_map, and Symbol::public.

Referenced by make_pointprocess().

register_destructor ( Pfri d )

References Memb_func::destructor.

Referenced by _pattern_reg_().

register_mech	(	char **	m,
		Pfri	alloc,
		Pfri	cur,
		Pfri	jacob,
		Pfri	stat,
		Pfri	initialize,
		int	nrnpointerindex,
		vectorized
	)

References Memb_list::_thread, Memb_func::_update_ion_pointers, Arrayinfo::a_varn, Memb_func::alloc, Symbol::arayinfo, buf, CHECK, CONST, Memb_func::current, Memb_func::destructor, emalloc, erealloc, fprintf(), hoc_install(), hoc_lookup(), Memb_func::hoc_mech, IGNORE, indx, Memb_func::initialize, int, Memb_func::is_point, Memb_func::jacob, memb_order_, Memb_list::nodecount, nrn_artcell_qindex_, nrn_dparam_ptr_end_, nrn_dparam_ptr_start_, nrn_exit(), nrn_is_artificial_, nrn_mk_prop_pools(), nrn_pnt_template_, nrn_prop_dparam_size_, NRNPOINTER, nrnpy_reg_mech_p_, Arrayinfo::nsub, pnt_map, pnt_receive, pnt_receive_init, pnt_receive_size, Symbol::ppsym, Symbol::public, Arrayinfo::refcount, Symbol::rng, s, Symbol::s_varn, STATE, Memb_func::state, Arrayinfo::sub, Symbol::subtype, Memb_func::sym, Memb_func::thread_cleanup_, Memb_func::thread_mem_init_, Memb_func::thread_size_, Memb_func::thread_table_check_, type, Symbol::u, and Memb_func::vectorized.

Referenced by _hh_reg_(), _passive_reg_(), _xmech_reg_(), KSChan::add_channel(), capac_reg_(), hoc_last_init(), ion_reg(), and passive0_reg_().

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state_discontinuity	(	int	i,
		double*	pd,
		double	d
	)

References state_discon_allowed_.

Variable Documentation

int int _ninits

Referenced by nrn_finitialize().

BAMech** bamech_

double celsius

Referenced by initnrn().

double clamp_resist

Referenced by clamp_prepare(), fclampi(), initnrn(), and print_clamp().

double dt

Symlist * hoc_built_in_symlist

double hoc_default_dll_loaded_

Referenced by hoc_last_init().

Symlist* hoc_symlist

double htablemax

double htablemin

Memb_func* memb_func

Referenced by NrnProperty::assign(), SaveState::checkacell(), SaveState::checknode(), NonLinImpRep::current(), NonLinImpRep::delta(), NonLinImpRep::dids(), NonLinImpRep::didv(), NonLinImpRep::dsds(), NonLinImpRep::dsdv(), for(), hoc_new_opoint(), hoc_reg_singlechan(), MechanismType::insert(), ion_charge(), ion_reg(), ion_register(), NrnProperty::is_point(), ismembrane(), MechanismType::MechanismType(), MechanismType::menu(), nernst(), NonLinImpRep::NonLinImpRep(), nonvint(), nrn_cache_prop_realloc(), nrn_errno_check(), nrn_finitialize(), nrn_is_ion(), nrn_lhs(), nrn_mk_table_check(), nrn_new_pointprocess(), nrn_relocate_old_points(), nrn_rhs(), nrn_thread_table_check(), nrn_threads_free(), nrnpointmenu(), NrnPropertyImpl::NrnPropertyImpl(), nrnpy_setpointer_helper(), NonLinImpRep::ode(), MechanismType::point_process(), prop_alloc(), MechanismType::remove(), MechanismType::select(), MechanismType::selected(), KSChan::set_single(), KSChan::setion(), KSChan::setligand(), KSChan::settype(), SaveState::ssi_def(), and KSChan::usetable().

Memb_list* memb_list

Referenced by SaveState::allocacell(), SaveState::checkacell(), nrn_finitialize(), SaveState::read(), SaveState::restoreacell(), and SaveState::saveacell().

short* memb_order_

Referenced by hoc_last_init(), nrn_finitialize(), nrn_writes_conc(), and register_mech().

int n_memb_func

Referenced by MechanismType::MechanismType(), nrn_finitialize(), nrnallpointmenu(), SaveState::SaveState(), and SaveState::ssi_def().

short* nrn_artcell_qindex_

Referenced by add_nrn_artcell(), hoc_last_init(), and register_mech().

int* nrn_dparam_ptr_end_

Referenced by hoc_last_init(), and register_mech().

int* nrn_dparam_ptr_start_

Referenced by hoc_last_init(), and register_mech().

int nrn_fornetcon_cnt_

Referenced by add_nrn_fornetcons().

int* nrn_fornetcon_index_

Referenced by add_nrn_fornetcons().

int* nrn_fornetcon_type_

Referenced by add_nrn_fornetcons().

int nrn_global_ncell = 0

Referenced by SaveState::check(), if(), and nrn_modeltype().

int* nrn_has_net_event_

Referenced by add_nrn_has_net_event(), and MechanismType::has_net_event().

int nrn_has_net_event_cnt_

Referenced by add_nrn_has_net_event(), and MechanismType::has_net_event().

short* nrn_is_artificial_

Referenced by add_nrn_artcell(), create_point_process(), get_loc_point_process(), hoc_last_init(), MechanismType::is_artificial(), loc_point_process(), nrn_finitialize(), nrn_is_artificial(), nrn_loc_point_process(), nrn_vecsim_add(), SaveState::read(), register_mech(), SaveState::restore(), SaveState::save(), SaveState::SaveState(), and SaveState::write().

int nrn_istty_

Referenced by hoc_reg_singlechan(), and ivocmain().

int nrn_nobanner_

Referenced by hoc_last_init(), and ivocmain().

Template** nrn_pnt_template_

Referenced by hoc_last_init(), nrn_finitialize(), and register_mech().

int* nrn_prop_dparam_size_

Referenced by hoc_last_init(), hoc_register_dparam_size(), and register_mech().

void(* nrnpy_reg_mech_p_)(int)

Referenced by nrnpy_nrn(), point_reg_helper(), and register_mech().

char* pnt_map

Referenced by hoc_construct_point(), hoc_last_init(), nrn_new_pointprocess(), nrn_relocate_old_points(), point_reg_helper(), register_mech(), single_prop_free(), and special_pnt_call().

Pfrv* pnt_receive

Referenced by hoc_last_init(), MechanismType::is_netcon_target(), register_mech(), and SaveState::ssi_def().

Pfrv* pnt_receive_init

Referenced by hoc_last_init(), and register_mech().

short* pnt_receive_size

Referenced by hoc_last_init(), and register_mech().

Point_process** point_process

Symbol** pointsym

Referenced by nrnallpointmenu().

int secondorder = 0

Referenced by initnrn(), linmod_init(), and nrn_daspk_init_step().

hoc_List* section_list

Referenced by forall_section(), new_sections(), nrn_shape_update(), nrnpy_forall(), and topology().

int state_discon_allowed_

Referenced by fcurrent(), nrn_finitialize(), nrn_initcode(), and state_discontinuity().

int state_discon_flag_ = 0

double t

init.c File Reference

Classes

Defines

Typedefs

Functions

Variables

Define Documentation

Typedef Documentation

Function Documentation

Variable Documentation