section.h File Reference

#include "nrnredef.h"
#include "options.h"
#include "hoclist.h"
#include "hocdec.h"
#include <multicore.h>

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Classes
struct	Section
struct	Node
struct	Prop
struct	Point_process
Defines
#define	xpop   hoc_xpop
#define	pc   hoc_pc
#define	spop   hoc_spop
#define	execerror   hoc_execerror
#define	NODED(n)   (*((n)->_d))
#define	NODERHS(n)   (*((n)->_rhs))
#define	NODEA(n)   ((n)->_a)
#define	NODEB(n)   ((n)->_b)
#define	NODEV(n)   ((n)->_v)
#define	NODEAREA(n)   ((n)->_area)
#define	PROP_PY_INDEX   10
#define	ForAllSections(sec)   ITERATE(qsec, section_list) { Section* sec = hocSEC(qsec);
#define	tstopbit   (1 << 15)
#define	tstopset   stoprun |= tstopbit
#define	tstopunset   stoprun &= (~tstopbit)
Typedefs
typedef struct Section	Section
typedef struct Node	Node
typedef struct Prop	Prop
typedef struct Point_process	Point_process
Functions
double *	nrn_prop_data_alloc (int type, int count, Prop *p)
Datum *	nrn_prop_datum_alloc (int type, int count, Prop *p)
void	nrn_prop_data_free (int type, double *pd)
void	nrn_prop_datum_free (int type, Datum *ppd)
Section *	chk_access ()
Section *	sec_alloc ()
void	node_alloc ()
double	section_length ()
double	nrn_diameter ()
double	nrn_ghk ()
Node *	nrn_parent_node (Node *)
Variables
int	use_sparse13
int	use_cachevec
int	nrn_global_ncell
hoc_List *	section_list
int	stoprun

---

Define Documentation

#define execerror   hoc_execerror

ForAllSections

(

sec

)

ITERATE(qsec, section_list) { Section* sec = hocSEC(qsec);

Referenced by SaveState::alloc(), SaveState::check(), chk_access(), connection_coef(), for(), KSChan::ion_consist(), SymDirectoryImpl::load_sectionlist(), nrn_clear_mark(), nrn_complain(), nrn_noerr_access(), nrn_user_partition(), push_section(), section_order(), and KSChan::state_consist().

#define NODEA

(

n

)

((n)->_a)

Referenced by NonLinImpRep::didv(), Imp::LUDecomp(), nrn_classicalNodeA(), nrn_classicalNodeB(), nrn_lhs(), nrn_rhs(), MultiSplitControl::pmat(), and MultiSplitControl::pmatf().

#define NODEAREA

(

n

)

((n)->_area)

Referenced by area(), for(), ForAllSections(), node_ptr(), nrn_area_ri(), nrn_loc_point_process(), nrn_node_destruct1(), Imp::setmat(), NonLinImp::solve(), and Imp::solve().

#define NODEB

(

n

)

((n)->_b)

Referenced by bksub(), NonLinImpRep::didv(), Imp::LUDecomp(), nrn_classicalNodeA(), nrn_classicalNodeB(), nrn_lhs(), nrn_rhs(), MultiSplitControl::pmat(), MultiSplitControl::pmatf(), and Imp::solve().

#define NODED

(

n

)

(*((n)->_d))

Referenced by activclamp_lhs(), activsynapse_lhs(), bksub(), KSChan::jacob(), nrn_cap_jacob(), nrn_lhs(), nrn_print_matrix(), MultiSplitControl::pmat(), MultiSplitControl::pmatf(), MultiSplitControl::rt_map_update(), and Imp::setmat().

#define NODERHS

(

n

)

(*((n)->_rhs))

Referenced by activclamp_rhs(), activstim_rhs(), activsynapse_rhs(), bksub(), KSChan::cur(), NonLinImpRep::dids(), NonLinImpRep::didv(), nrn_capacity_current(), nrn_print_matrix(), nrn_rhs(), MultiSplitControl::pmat(), MultiSplitControl::pmatf(), MultiSplitControl::rt_map_update(), Imp::setmat(), and Imp::setmat1().

#define NODEV

(

n

)

((n)->_v)

Referenced by activclamp_rhs(), LinearMechanism::create(), KSChan::cur(), KSSingle::cv_update(), KSSingleNodeData::deliver(), NonLinImpRep::didv(), NonLinImpRep::dsdv(), fclampi(), KSChan::init(), KSChan::jacob(), KSChan::matsol(), node_construct(), NonLinImpRep::NonLinImpRep(), nrn_finitialize(), nrn_node_destruct1(), nrn_rhs(), KSSingleTrans::rate(), SaveState::restorenode(), SaveState::savenode(), KSChan::spec(), KSSingle::state(), KSChan::state(), LinearMechanism::update_ptrs(), and LinearModelAddition::v2y().

#define pc   hoc_pc

#define PROP_PY_INDEX   10

Referenced by nrnpy_cas(), and secname().

#define spop   hoc_spop

#define tstopbit   (1 << 15)

#define tstopset   stoprun |= tstopbit

#define tstopunset   stoprun &= (~tstopbit)

Referenced by batch_run(), fadvance(), finitialize(), and BBS::netpar_solve().

#define xpop   hoc_xpop

---

Typedef Documentation

typedef struct Node Node

typedef struct Point_process Point_process

typedef struct Prop Prop

typedef struct Section Section

---

Function Documentation

Section* chk_access

(

)

void node_alloc

(

)

double nrn_diameter

(

)

double nrn_ghk

(

)

Node* nrn_parent_node

(

Node *

)

References Node::_classical_parent.

double* nrn_prop_data_alloc	(	int	type,
		int	count,
		Prop *	p
	)

References Prop::_alloc_seq, APSIZE, assert, hoc_Ecalloc(), hoc_malchk(), and pd.

Referenced by KSChan::alloc(), and morph_alloc().

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void nrn_prop_data_free	(	int	type,
		double *	pd
	)

Referenced by clear_point_process_struct(), and single_prop_free().

Datum* nrn_prop_datum_alloc	(	int	type,
		int	count,
		Prop *	p
	)

References Prop::_alloc_seq, Datum::_pvoid, APSIZE, assert, hoc_Ecalloc(), and hoc_malchk().

Referenced by KSChan::alloc(), and cab_alloc().

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void nrn_prop_datum_free	(	int	type,
		Datum *	ppd
	)

Referenced by clear_point_process_struct(), and single_prop_free().

Section* sec_alloc

(

)

References Section::child, emalloc, Section::nnode, Section::parentnode, Section::parentsec, Section::pnode, Section::prop, Section::recalc_area_, Section::refcount, sec, and Section::sibling.

double section_length

(

)

---

Variable Documentation

int nrn_global_ncell

Referenced by SaveState::check(), if(), and nrn_modeltype().

hoc_List* section_list

Referenced by forall_section(), new_sections(), nrn_shape_update(), nrnpy_forall(), and topology().

int stoprun

int use_cachevec

Referenced by bksub(), nrn_cachevec(), nrn_cap_jacob(), nrn_capacity_current(), nrn_lhs(), nrn_rhs(), and MultiSplitControl::v_setup().

int use_sparse13

Referenced by nrn_cachevec(), nrn_finitialize(), nrn_lhs(), nrn_matrix_node_alloc(), nrn_method_consistent(), nrn_print_matrix(), nrn_rhs(), nrn_solve(), and MultiSplitControl::v_setup().