Reaction-diffusion in NEURON

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Introduction and request for suggestions

Last post by Keivan « Thu Aug 08, 2013 10:48 am
Replies: 5
by wwlytton » Fri Feb 13, 2009 7:58 am

5 Replies

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Last post by Keivan
Thu Aug 08, 2013 10:48 am

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Reactions only when concentration above a certain limit?

Last post by adamjhn « Mon Mar 18, 2019 11:24 am
Replies: 1
by bremen » Sat Mar 16, 2019 12:06 pm

1 Replies

25967 Views

Last post by adamjhn
Mon Mar 18, 2019 11:24 am
diffusion intracellular->extracellular->intracellular

Last post by bremen « Sun Mar 03, 2019 8:17 am
Replies: 7
by bremen » Thu Feb 07, 2019 11:25 am

7 Replies

21378 Views

Last post by bremen
Sun Mar 03, 2019 8:17 am
USEION in mod files for RxD species I created

Last post by ted « Fri Mar 01, 2019 5:52 pm
Replies: 3
by bschneiders » Fri Mar 01, 2019 9:48 am

3 Replies

15607 Views

Last post by ted
Fri Mar 01, 2019 5:52 pm
RXD lower concentration limit?

Last post by RBJ « Mon Feb 18, 2019 5:13 pm
Replies: 2
by RBJ » Sat Feb 16, 2019 6:29 am

2 Replies

6794 Views

Last post by RBJ
Mon Feb 18, 2019 5:13 pm
Unexpected 3D behaviour

Last post by RBJ « Mon Feb 04, 2019 4:19 pm
Replies: 2
by RBJ » Thu Jan 31, 2019 3:24 pm

2 Replies

6514 Views

Last post by RBJ
Mon Feb 04, 2019 4:19 pm
3D Dimensional RXD/CRXD

Last post by RBJ « Thu Jan 31, 2019 2:59 pm
Replies: 4
by RBJ » Fri Jan 25, 2019 2:51 pm

4 Replies

8551 Views

Last post by RBJ
Thu Jan 31, 2019 2:59 pm
Different reaction rates in different sections

Last post by RBJ « Tue Jan 22, 2019 11:00 am
Replies: 3
by RBJ » Mon Jan 21, 2019 8:20 am

3 Replies

6786 Views

Last post by RBJ
Tue Jan 22, 2019 11:00 am
updating Species and Rates inputs

Last post by bschneiders « Fri Jan 18, 2019 3:08 pm
Replies: 2
by bschneiders » Wed Jan 16, 2019 2:41 pm

2 Replies

6584 Views

Last post by bschneiders
Fri Jan 18, 2019 3:08 pm
Reaction-Diffusion in HOC

Last post by Darshan « Sat Nov 17, 2018 2:28 am
Replies: 5
by ramcdougal » Fri Oct 27, 2017 10:09 am

5 Replies

26857 Views

Last post by Darshan
Sat Nov 17, 2018 2:28 am
maximum length for the name of a species?

Last post by Tuoma « Fri Nov 16, 2018 6:07 am
Replies: 2
by Tuoma » Wed Nov 14, 2018 10:59 am

2 Replies

6243 Views

Last post by Tuoma
Fri Nov 16, 2018 6:07 am
Add term to RxD solution.

Last post by ramcdougal « Fri Sep 14, 2018 10:59 am
Replies: 2
by ahmed.hamzah » Fri Sep 07, 2018 5:43 pm

2 Replies

8124 Views

Last post by ramcdougal
Fri Sep 14, 2018 10:59 am
RxD in Neuron

Last post by ahmed.hamzah « Mon Aug 27, 2018 7:55 pm
Replies: 3
by ahmed.hamzah » Fri Aug 24, 2018 5:08 pm

3 Replies

8112 Views

Last post by ahmed.hamzah
Mon Aug 27, 2018 7:55 pm
different results from NEURON version 7.5 and NEURON version 7.4

Last post by adamjhn « Mon Jul 23, 2018 3:38 pm
Replies: 1
by yz398 » Mon Jul 23, 2018 2:29 pm

1 Replies

5087 Views

Last post by adamjhn
Mon Jul 23, 2018 3:38 pm
Custom reaction rates

Last post by ramcdougal « Mon Jun 11, 2018 11:28 am
Replies: 1
by Tuoma » Mon Jun 11, 2018 11:25 am

1 Replies

6461 Views

Last post by ramcdougal
Mon Jun 11, 2018 11:28 am
Different species parameters for different regions

Last post by bschneiders « Thu Jun 07, 2018 6:02 pm
Replies: 7
by bschneiders » Thu Feb 15, 2018 1:18 pm

7 Replies

14006 Views

Last post by bschneiders
Thu Jun 07, 2018 6:02 pm
Negative concentrations

Last post by ramcdougal « Thu May 10, 2018 5:45 pm
Replies: 5
by Tuoma » Mon May 07, 2018 10:36 am

5 Replies

9596 Views

Last post by ramcdougal
Thu May 10, 2018 5:45 pm
Radial diffusion using RxD?

Last post by bschneiders « Thu Apr 12, 2018 12:46 pm
Replies: 2
by bschneiders » Tue Apr 10, 2018 12:33 pm

2 Replies

7005 Views

Last post by bschneiders
Thu Apr 12, 2018 12:46 pm
Is there a model that handles Signaling Pathways in rxd?

Last post by adamjhn « Thu Oct 05, 2017 6:21 pm
Replies: 1
by vogdb » Wed Sep 06, 2017 11:13 am

1 Replies

13772 Views

Last post by adamjhn
Thu Oct 05, 2017 6:21 pm
Reaction Not Proceeding

Last post by npatel « Tue Aug 01, 2017 8:42 am
Replies: 3
by npatel » Mon Jul 31, 2017 11:13 am

3 Replies

15318 Views

Last post by npatel
Tue Aug 01, 2017 8:42 am
Modeling extracellular space and a plasma membrane

Last post by ramcdougal « Wed Apr 26, 2017 3:10 pm
Replies: 3
by bschneiders » Tue Apr 04, 2017 5:34 pm

3 Replies

16041 Views

Last post by ramcdougal
Wed Apr 26, 2017 3:10 pm
Absolute tolerance scale in RxD

Last post by ramcdougal « Thu Apr 20, 2017 3:53 pm
Replies: 1
by bschneiders » Wed Apr 19, 2017 12:25 pm

1 Replies

12468 Views

Last post by ramcdougal
Thu Apr 20, 2017 3:53 pm
Basic modelling question

Last post by SurG « Thu Sep 08, 2016 5:49 am
Replies: 7
by stephanmg » Wed Jun 04, 2014 11:45 am

7 Replies

26735 Views

Last post by SurG
Thu Sep 08, 2016 5:49 am
Intracellular potassium depletion

Last post by yuzhou « Tue Sep 06, 2016 11:10 am
Replies: 2
by yuzhou » Sun Sep 04, 2016 12:26 am

2 Replies

15086 Views

Last post by yuzhou
Tue Sep 06, 2016 11:10 am
How to solve the calcium summation problem?

Last post by ylzang « Tue Jun 14, 2016 8:54 am
Replies: 5
by ylzang » Mon May 16, 2016 4:00 am

5 Replies

15510 Views

Last post by ylzang
Tue Jun 14, 2016 8:54 am
calcium diffusion in different shells

Last post by ted « Wed Jan 06, 2016 11:51 am
Replies: 8
by ylzang » Wed Dec 30, 2015 9:22 pm

8 Replies

13533 Views

Last post by ted
Wed Jan 06, 2016 11:51 am
New multiscale (molecular/net) neocortex model on ModelDB

Last post by samnemo « Fri Jan 01, 2016 11:31 am

by samnemo » Fri Jan 01, 2016 11:31 am

0 Replies

13842 Views

Last post by samnemo
Fri Jan 01, 2016 11:31 am
The dimension problem of the difusion

Last post by ted « Thu Jun 25, 2015 11:57 pm
Replies: 3
by ylzang » Thu Jun 11, 2015 8:39 pm

3 Replies

9632 Views

Last post by ted
Thu Jun 25, 2015 11:57 pm
New reaction-diffusion model on ModelDB

Last post by Darshan « Tue Apr 07, 2015 3:55 pm
Replies: 6
by samnemo » Thu Dec 18, 2014 1:23 pm

6 Replies

15829 Views

Last post by Darshan
Tue Apr 07, 2015 3:55 pm
Patch to geometry.py

Last post by ramcdougal « Wed Sep 24, 2014 2:44 pm
Replies: 3
by davidsterratt » Tue Sep 23, 2014 11:19 am

3 Replies

10999 Views

Last post by ramcdougal
Wed Sep 24, 2014 2:44 pm
Active Transport

Last post by ted « Mon Aug 25, 2014 11:50 am
Replies: 4
by ahwillia » Wed Aug 20, 2014 5:25 pm

4 Replies

12467 Views

Last post by ted
Mon Aug 25, 2014 11:50 am
Overriding _w_currents() in rxd.py

Last post by davidsterratt « Sun Jul 13, 2014 4:59 pm
Replies: 4
by davidsterratt » Tue Jul 08, 2014 11:43 am

4 Replies

12690 Views

Last post by davidsterratt
Sun Jul 13, 2014 4:59 pm
Reaction-diffusion is included with NEURON 7.3

Last post by ted « Thu Apr 11, 2013 10:41 am

by ted » Thu Apr 11, 2013 10:41 am

0 Replies

14146 Views

Last post by ted
Thu Apr 11, 2013 10:41 am
nseg odd?

Last post by ted « Wed Dec 16, 2009 2:24 am
Replies: 9
by gartland » Sat Dec 05, 2009 2:00 am

9 Replies

17446 Views

Last post by ted
Wed Dec 16, 2009 2:24 am

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