NEURON + Python

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Use NEURON's native GUI tools with Python!

Last post by ted « Fri Sep 27, 2019 11:23 am
Replies: 2
by ted » Tue Aug 08, 2017 2:48 pm

2 Replies

12284 Views

Last post by ted
Fri Sep 27, 2019 11:23 am
More NEURON + Python documentation

Last post by ramcdougal « Wed Oct 24, 2018 7:07 am
Replies: 6
by ted » Mon Mar 24, 2008 10:17 am

6 Replies

24836 Views

Last post by ramcdougal
Wed Oct 24, 2018 7:07 am
More NEURON + Python resources

Last post by wjbeaver « Wed Dec 22, 2010 4:38 pm
Replies: 4
by mctavish » Wed Dec 01, 2010 3:13 pm

4 Replies

16621 Views

Last post by wjbeaver
Wed Dec 22, 2010 4:38 pm
Best practice to run hundreds of simulations / remove all objects between runs

Last post by ziemek « Sat Jul 11, 2020 6:13 am
Replies: 6
by ziemek » Thu Jul 09, 2020 9:16 am

6 Replies

107 Views

Last post by ziemek
Sat Jul 11, 2020 6:13 am
Does the usage of the Shape may affect mV readouts?

Last post by ted « Thu Jul 09, 2020 2:35 pm
Replies: 4
by ziemek » Mon Jun 29, 2020 6:29 am

4 Replies

137 Views

Last post by ted
Thu Jul 09, 2020 2:35 pm
color or color_list procedures in PlotShape

Last post by roybens « Tue Jul 07, 2020 5:59 pm
Replies: 2
by roybens » Mon Jul 06, 2020 4:58 pm

2 Replies

65 Views

Last post by roybens
Tue Jul 07, 2020 5:59 pm
Error recording channel current by passing string to Vector.record

Last post by ramcdougal « Mon Jun 29, 2020 12:38 pm
Replies: 3
by Darshan » Sat Jun 20, 2020 1:42 am

3 Replies

167 Views

Last post by ramcdougal
Mon Jun 29, 2020 12:38 pm
ampanmda mod file working with AlphaSynapse

Last post by ted « Tue Jun 23, 2020 4:29 pm
Replies: 7
by parent41 » Fri Jun 05, 2020 10:53 am

7 Replies

899 Views

Last post by ted
Tue Jun 23, 2020 4:29 pm
range morphology and mechanism syntax for sections in python

Last post by ted « Sat May 30, 2020 2:02 am
Replies: 9
by nicholasmg » Mon May 11, 2020 11:26 pm

9 Replies

617 Views

Last post by ted
Sat May 30, 2020 2:02 am
using compiled mod files from python script in a different direcory

Last post by nicholasmg « Wed Apr 29, 2020 6:09 pm
Replies: 2
by nicholasmg » Wed Apr 29, 2020 5:43 pm

2 Replies

389 Views

Last post by nicholasmg
Wed Apr 29, 2020 6:09 pm
cell counting on an image with python

Last post by ted « Wed Apr 15, 2020 4:20 pm
Replies: 3
by fpointeau » Mon Apr 13, 2020 11:54 am

3 Replies

640 Views

Last post by ted
Wed Apr 15, 2020 4:20 pm
Record from multiple neurons

Last post by ted « Thu Apr 09, 2020 12:05 pm
Replies: 2
by Mrohani57 » Wed Apr 08, 2020 6:47 pm

2 Replies

432 Views

Last post by ted
Thu Apr 09, 2020 12:05 pm
Copy a nrn object in Python?

Last post by ramcdougal « Sat Apr 04, 2020 4:55 pm
Replies: 5
by igor » Wed Apr 01, 2020 1:02 pm

5 Replies

658 Views

Last post by ramcdougal
Sat Apr 04, 2020 4:55 pm
inserting synaptic mechanisms from mod file

Last post by ted « Fri Apr 03, 2020 1:37 pm
Replies: 1
by Natali83 » Wed Apr 01, 2020 1:44 pm

1 Replies

454 Views

Last post by ted
Fri Apr 03, 2020 1:37 pm
NetStim and NetCon

Last post by ramcdougal « Thu Apr 02, 2020 9:47 am
Replies: 3
by anandhupresannan » Mon Mar 09, 2020 1:15 am

3 Replies

591 Views

Last post by ramcdougal
Thu Apr 02, 2020 9:47 am
Using vectors as arguments for pt3dadd

Last post by neuromau « Tue Mar 03, 2020 9:06 pm
Replies: 2
by neuromau » Mon Mar 02, 2020 3:46 pm

2 Replies

457 Views

Last post by neuromau
Tue Mar 03, 2020 9:06 pm
Vector Values

Last post by ramcdougal « Wed Feb 26, 2020 9:46 am
Replies: 2
by Jahanzaib » Tue Feb 25, 2020 2:50 pm

2 Replies

457 Views

Last post by ramcdougal
Wed Feb 26, 2020 9:46 am
For loop over section's segments in Python and HOC returns different values

Last post by ramcdougal « Fri Jan 31, 2020 5:15 pm
Replies: 4
by ziemek » Fri Jan 31, 2020 5:14 am

4 Replies

643 Views

Last post by ramcdougal
Fri Jan 31, 2020 5:15 pm
Rset or reboot neuron without exist in python

Last post by ramcdougal « Wed Jan 29, 2020 8:07 pm
Replies: 6
by anandhupresannan » Wed Feb 27, 2019 1:14 am

6 Replies

1504 Views

Last post by ramcdougal
Wed Jan 29, 2020 8:07 pm
Dynamically accessing vectors in python (_ref_x)

Last post by cstricker « Sun Jan 19, 2020 5:27 pm
Replies: 5
by cstricker » Thu Jan 09, 2020 2:10 am

5 Replies

677 Views

Last post by cstricker
Sun Jan 19, 2020 5:27 pm
different section names, morphology - h.Section

Last post by bremen « Thu Jan 16, 2020 4:10 pm
Replies: 2
by bremen » Fri Jan 10, 2020 4:53 pm

2 Replies

496 Views

Last post by bremen
Thu Jan 16, 2020 4:10 pm
Finding middle of a section

Last post by ted « Mon Jan 13, 2020 1:00 pm
Replies: 4
by ssrihari » Sat Jan 11, 2020 5:50 pm

4 Replies

576 Views

Last post by ted
Mon Jan 13, 2020 1:00 pm
Converting HOC extracellular to Python

Last post by ssrihari « Sat Jan 11, 2020 7:36 pm
Replies: 3
by ssrihari » Tue Dec 31, 2019 5:42 pm

3 Replies

598 Views

Last post by ssrihari
Sat Jan 11, 2020 7:36 pm
Print Issue after using .connect()

Last post by ted « Thu Jan 02, 2020 10:05 pm
Replies: 1
by ssrihari » Tue Dec 31, 2019 4:19 pm

1 Replies

459 Views

Last post by ted
Thu Jan 02, 2020 10:05 pm
Associative arrays in HOC

Last post by ted « Wed Jan 01, 2020 7:48 pm
Replies: 5
by vogdb » Fri Dec 13, 2019 5:36 pm

5 Replies

737 Views

Last post by ted
Wed Jan 01, 2020 7:48 pm
Video Tutorial on how to compile .mod file and incorporate it with Python for simulation

Last post by ted « Tue Dec 17, 2019 1:18 pm
Replies: 1
by shhschen » Mon Dec 16, 2019 9:34 pm

1 Replies

619 Views

Last post by ted
Tue Dec 17, 2019 1:18 pm
How to access HOC arrays from Python?

Last post by ziemek « Tue Dec 10, 2019 2:10 pm
Replies: 2
by ziemek » Wed Dec 04, 2019 8:00 am

2 Replies

647 Views

Last post by ziemek
Tue Dec 10, 2019 2:10 pm
Shape plot update from Python

Last post by ziemek « Tue Dec 03, 2019 3:06 am
Replies: 2
by ziemek » Mon Dec 02, 2019 1:22 pm

2 Replies

623 Views

Last post by ziemek
Tue Dec 03, 2019 3:06 am
How to get synapse offset/position

Last post by vogdb « Wed Nov 27, 2019 3:52 am
Replies: 5
by vogdb » Thu Nov 21, 2019 5:46 am

5 Replies

789 Views

Last post by vogdb
Wed Nov 27, 2019 3:52 am
Is it possible to run nrnivmodl from python?

Last post by RobinDS « Fri Nov 22, 2019 3:37 pm
Replies: 4
by RobinDS » Fri Nov 22, 2019 9:38 am

4 Replies

1038 Views

Last post by RobinDS
Fri Nov 22, 2019 3:37 pm
Frequency dependent activation of g protein models

Last post by jofrony « Tue Nov 12, 2019 6:20 am

by jofrony » Tue Nov 12, 2019 6:20 am

0 Replies

741 Views

Last post by jofrony
Tue Nov 12, 2019 6:20 am
How to add synapses to an Adex model

Last post by anandhupresannan « Wed Nov 06, 2019 1:16 am
Replies: 4
by anandhupresannan » Fri Oct 25, 2019 12:55 am

4 Replies

879 Views

Last post by anandhupresannan
Wed Nov 06, 2019 1:16 am
Parallel NMODL array assignment

Last post by duytanph « Thu Oct 31, 2019 3:49 pm
Replies: 8
by duytanph » Thu Oct 17, 2019 9:11 pm

8 Replies

1357 Views

Last post by duytanph
Thu Oct 31, 2019 3:49 pm
accessing the same instantiation of a cell template from another python script

Last post by alexandrapierri « Thu Oct 24, 2019 12:37 pm
Replies: 4
by alexandrapierri » Wed Oct 16, 2019 5:38 pm

4 Replies

1007 Views

Last post by alexandrapierri
Thu Oct 24, 2019 12:37 pm
Problems using VClamp

Last post by ted « Mon Oct 21, 2019 9:43 am
Replies: 1
by camilhamdane » Mon Oct 21, 2019 4:40 am

1 Replies

684 Views

Last post by ted
Mon Oct 21, 2019 9:43 am
Different v_init for different neurons in a network

Last post by ted « Thu Oct 10, 2019 11:14 am
Replies: 1
by Johannes » Wed Oct 09, 2019 11:30 am

1 Replies

800 Views

Last post by ted
Thu Oct 10, 2019 11:14 am
running hoc files accompanied by comand line arguments, in Python

Last post by alexandrapierri « Wed Oct 02, 2019 5:53 pm
Replies: 2
by alexandrapierri » Wed Sep 25, 2019 3:44 pm

2 Replies

894 Views

Last post by alexandrapierri
Wed Oct 02, 2019 5:53 pm
error in saving a voltage trace into a figure

Last post by ted « Tue Sep 24, 2019 12:19 pm
Replies: 2
by alexandrapierri » Tue Sep 24, 2019 11:20 am

2 Replies

875 Views

Last post by ted
Tue Sep 24, 2019 12:19 pm
Filter Mechanism params by NMODL PARAMETER

Last post by vogdb « Sat Sep 21, 2019 10:02 am
Replies: 8
by vogdb » Thu Sep 19, 2019 7:25 am

8 Replies

1513 Views

Last post by vogdb
Sat Sep 21, 2019 10:02 am
Export to .hoc with CellBuilder from Python

Last post by vogdb « Wed Sep 11, 2019 12:07 pm
Replies: 2
by vogdb » Tue Sep 10, 2019 12:32 pm

2 Replies

1647 Views

Last post by vogdb
Wed Sep 11, 2019 12:07 pm
TypeError: sec is not a Section"

Last post by ted « Sat Sep 07, 2019 12:09 pm
Replies: 3
by alexandrapierri » Tue Sep 03, 2019 7:43 pm

3 Replies

1299 Views

Last post by ted
Sat Sep 07, 2019 12:09 pm
Save model's biophysics and morphology programmatically to .hoc

Last post by vogdb « Wed Sep 04, 2019 6:42 am
Replies: 3
by vogdb » Tue Sep 03, 2019 11:25 am

3 Replies

1043 Views

Last post by vogdb
Wed Sep 04, 2019 6:42 am
Control a simulation step by step

Last post by camilhamdane « Thu Aug 29, 2019 12:11 pm
Replies: 2
by camilhamdane » Wed Aug 28, 2019 1:29 pm

2 Replies

1033 Views

Last post by camilhamdane
Thu Aug 29, 2019 12:11 pm
Issue with Exp2Syn and stimulation of multiple dendrites

Last post by ted « Mon Aug 26, 2019 11:02 am
Replies: 3
by Liz_Stan_88 » Thu Aug 22, 2019 4:20 am

3 Replies

1496 Views

Last post by ted
Mon Aug 26, 2019 11:02 am
injecting continuous normally distributed noise in python

Last post by thiank « Sun Aug 25, 2019 10:57 pm

by thiank » Sun Aug 25, 2019 10:57 pm

0 Replies

962 Views

Last post by thiank
Sun Aug 25, 2019 10:57 pm
Does Section have something like `id` attribute?

Last post by vogdb « Thu Aug 22, 2019 3:34 am
Replies: 2
by vogdb » Wed Aug 21, 2019 12:16 pm

2 Replies

936 Views

Last post by vogdb
Thu Aug 22, 2019 3:34 am
Convert Python to Hoc

Last post by ted « Thu Aug 15, 2019 3:41 pm
Replies: 4
by vogdb » Wed Aug 14, 2019 2:24 pm

4 Replies

1324 Views

Last post by ted
Thu Aug 15, 2019 3:41 pm
DLL load failed & No module named hoc error

Last post by camilhamdane « Wed Aug 07, 2019 5:18 am
Replies: 2
by camilhamdane » Mon Aug 05, 2019 4:36 pm

2 Replies

1410 Views

Last post by camilhamdane
Wed Aug 07, 2019 5:18 am
Using FInitializeHandler to set initial voltages for a subset of cells

Last post by pascal « Fri Jul 12, 2019 12:23 pm
Replies: 2
by pascal » Thu Jul 11, 2019 7:24 pm

2 Replies

1029 Views

Last post by pascal
Fri Jul 12, 2019 12:23 pm
Guidance on plotting cell's geometry in Python?

Last post by JustasB « Wed Jun 12, 2019 8:43 pm
Replies: 4
by dgalt » Fri May 20, 2016 12:02 pm

4 Replies

8039 Views

Last post by JustasB
Wed Jun 12, 2019 8:43 pm

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