Anatomically detailed models

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Loading a morphology as a hoc file

Last post by ramcdougal « Thu Feb 25, 2021 7:49 pm
Replies: 3
by sohaib786 » Thu Feb 25, 2021 9:02 am

3 Replies

16 Views

Last post by ramcdougal
Thu Feb 25, 2021 7:49 pm
The effect of changed dt and steps_per_ms

Last post by ted « Tue Jan 19, 2021 11:08 am
Replies: 3
by Christine Chung » Wed Jan 13, 2021 2:45 am

3 Replies

141 Views

Last post by ted
Tue Jan 19, 2021 11:08 am
Questions about geometry & area(x)

Last post by ted « Thu Sep 10, 2020 12:29 am
Replies: 3
by agmccrei » Fri Sep 11, 2015 2:44 am

3 Replies

6447 Views

Last post by ted
Thu Sep 10, 2020 12:29 am
morphology altered when Import3d exports to CellBuilder

Last post by DavidSwygart « Mon May 11, 2020 10:45 pm
Replies: 4
by DavidSwygart » Mon Apr 27, 2020 12:13 am

4 Replies

1262 Views

Last post by DavidSwygart
Mon May 11, 2020 10:45 pm
importing .asc (Neurolucida ASCII) files with Python

Last post by ted « Fri Apr 24, 2020 10:41 am
Replies: 4
by hjunji21 » Tue Jun 05, 2018 5:29 pm

4 Replies

5385 Views

Last post by ted
Fri Apr 24, 2020 10:41 am
Neuron transforms soma that is loaded from .swc. What is the rule for it?

Last post by vogdb « Fri Feb 21, 2020 7:12 am
Replies: 4
by vogdb » Mon Feb 10, 2020 6:58 am

4 Replies

2115 Views

Last post by vogdb
Fri Feb 21, 2020 7:12 am
altering length and diameter over a subset

Last post by ted « Sun Dec 22, 2019 9:36 pm
Replies: 1
by fabien tell » Fri Dec 20, 2019 9:41 am

1 Replies

818 Views

Last post by ted
Sun Dec 22, 2019 9:36 pm
Is there any way to bifurcate axon?

Last post by ted « Wed Dec 18, 2019 9:10 pm
Replies: 3
by Christine Chung » Tue Dec 17, 2019 12:02 am

3 Replies

920 Views

Last post by ted
Wed Dec 18, 2019 9:10 pm
Precise 3D morphology

Last post by ted « Thu Dec 12, 2019 10:49 am
Replies: 6
by ziemek » Tue Dec 10, 2019 2:41 pm

6 Replies

2319 Views

Last post by ted
Thu Dec 12, 2019 10:49 am
measurments of area by section

Last post by fabien tell « Mon Nov 18, 2019 7:22 am
Replies: 2
by fabien tell » Fri Nov 15, 2019 8:55 am

2 Replies

916 Views

Last post by fabien tell
Mon Nov 18, 2019 7:22 am
3D rotation in Cell Builder

Last post by ted « Wed Oct 09, 2019 10:29 am
Replies: 3
by DavidSwygart » Fri Oct 04, 2019 5:37 pm

3 Replies

2223 Views

Last post by ted
Wed Oct 09, 2019 10:29 am
How does 'Z. F. Mainen and T. J. Sejnowski (1996)' model work?

Last post by Christine Chung « Fri Aug 09, 2019 1:48 am
Replies: 2
by Christine Chung » Thu Aug 08, 2019 7:51 am

2 Replies

1399 Views

Last post by Christine Chung
Fri Aug 09, 2019 1:48 am
Neurolucida to NEURON best practices?

Last post by hines « Tue Jul 16, 2019 8:34 pm
Replies: 26
by bsuter » Fri Oct 29, 2010 2:36 am
1

2
26 Replies

30285 Views

Last post by hines
Tue Jul 16, 2019 8:34 pm
Morphology import error

Last post by ted « Mon Jul 15, 2019 3:30 pm
Replies: 4
by shyam_u2 » Tue Jul 02, 2019 10:07 am

4 Replies

1696 Views

Last post by ted
Mon Jul 15, 2019 3:30 pm
converting hoc to swc

Last post by ted « Sun Jun 09, 2019 8:50 am
Replies: 7
by mflynn » Thu Feb 08, 2007 7:00 pm

7 Replies

8017 Views

Last post by ted
Sun Jun 09, 2019 8:50 am
Recreating JUST the morphology from an available model (that is coded in an unfamiliar way)

Last post by sbrich « Tue May 07, 2019 4:21 pm
Replies: 3
by sbrich » Fri May 03, 2019 10:46 am

3 Replies

1793 Views

Last post by sbrich
Tue May 07, 2019 4:21 pm
Confusion regarding get_loc and h.cas

Last post by ted « Fri Mar 15, 2019 11:35 am
Replies: 11
by sbrich » Thu Mar 07, 2019 3:03 pm

11 Replies

3784 Views

Last post by ted
Fri Mar 15, 2019 11:35 am
Placing a point process at a known 3D location

Last post by ted « Tue Dec 18, 2018 6:39 pm
Replies: 3
by DavidSwygart » Tue Dec 11, 2018 11:45 am

3 Replies

2437 Views

Last post by ted
Tue Dec 18, 2018 6:39 pm
Extracellular Fields

Last post by mzenker « Tue Oct 02, 2018 9:21 am
Replies: 29
by Sherif » Thu Oct 13, 2005 5:14 pm
1

2
29 Replies

43439 Views

Last post by mzenker
Tue Oct 02, 2018 9:21 am
Using Impedance Class for model with Ca accumulation

Last post by Darshan « Thu Sep 27, 2018 10:52 am
Replies: 8
by Darshan » Sat Sep 22, 2018 8:44 am

8 Replies

4230 Views

Last post by Darshan
Thu Sep 27, 2018 10:52 am
GUID keyword error when importing .asc

Last post by ted « Tue Sep 18, 2018 2:06 pm
Replies: 3
by aeronlaffere » Fri Aug 31, 2018 12:26 pm

3 Replies

2444 Views

Last post by ted
Tue Sep 18, 2018 2:06 pm
How to calculate calcium concentration in multi-compartment model

Last post by ted « Fri Sep 14, 2018 12:21 pm
Replies: 2
by NorthWang » Sun Sep 02, 2018 7:55 am

2 Replies

2142 Views

Last post by ted
Fri Sep 14, 2018 12:21 pm
how to calculate section area

Last post by fabien tell « Tue Aug 28, 2018 11:44 am
Replies: 5
by fabien tell » Mon Aug 27, 2018 5:29 am

5 Replies

2945 Views

Last post by fabien tell
Tue Aug 28, 2018 11:44 am
area() function -- stylized method -- 3d-method

Last post by ngreiner « Tue Aug 28, 2018 4:00 am
Replies: 4
by ngreiner » Mon Aug 27, 2018 5:58 pm

4 Replies

3298 Views

Last post by ngreiner
Tue Aug 28, 2018 4:00 am
Changing diameters of reconstructed neurons

Last post by ted « Tue Jul 31, 2018 10:47 am
Replies: 5
by Tuoma » Mon Jul 30, 2018 3:47 am

5 Replies

2762 Views

Last post by ted
Tue Jul 31, 2018 10:47 am
Use import3D_swc_read to read the morphology from swc file

Last post by ted « Thu Jul 19, 2018 7:44 am
Replies: 2
by zyc » Thu Jul 19, 2018 2:55 am

2 Replies

3463 Views

Last post by ted
Thu Jul 19, 2018 7:44 am
Utilizing morphology from IMARIS: help classifying "filaments" as basal/apical dendrites, etc

Last post by ted « Wed Jul 18, 2018 3:58 pm
Replies: 6
by sbrich » Tue Jul 17, 2018 12:46 pm

6 Replies

2536 Views

Last post by ted
Wed Jul 18, 2018 3:58 pm
Making whole cells out of Mcintyre myelinated axon model (2002) and testing short and long-term plasticity between them

Last post by moeskiski « Tue Jul 17, 2018 12:17 pm
Replies: 15
by moeskiski » Mon Jun 11, 2018 6:34 am
1

2
15 Replies

9564 Views

Last post by moeskiski
Tue Jul 17, 2018 12:17 pm
Balancing Ionic Concentration in ECF (and ICF) with two interacting cells

Last post by ted « Thu Jun 28, 2018 1:53 pm
Replies: 1
by Darshan » Mon Jun 25, 2018 4:56 am

1 Replies

1818 Views

Last post by ted
Thu Jun 28, 2018 1:53 pm
CellBuilder changes

Last post by ted « Tue Apr 24, 2018 3:38 pm
Replies: 6
by chels » Mon Jun 09, 2008 4:15 pm

6 Replies

4504 Views

Last post by ted
Tue Apr 24, 2018 3:38 pm
Vext and the extracellular mechanism

Last post by ted « Thu Nov 02, 2017 11:12 am
Replies: 3
by charles1 » Tue Oct 24, 2017 8:53 pm

3 Replies

18266 Views

Last post by ted
Thu Nov 02, 2017 11:12 am
Using Import3D on Mac

Last post by neuromau « Fri Jul 28, 2017 8:22 am
Replies: 4
by neuromau » Thu Jul 27, 2017 9:46 am

4 Replies

7510 Views

Last post by neuromau
Fri Jul 28, 2017 8:22 am
distance() documentation

Last post by oren « Thu Jul 27, 2017 8:14 am
Replies: 5
by Brad » Mon Feb 06, 2006 4:00 pm

5 Replies

13266 Views

Last post by oren
Thu Jul 27, 2017 8:14 am
Parameter analysis in model translation

Last post by ted « Mon Jul 03, 2017 9:14 am
Replies: 1
by pdennevis » Fri Jun 30, 2017 4:02 pm

1 Replies

5971 Views

Last post by ted
Mon Jul 03, 2017 9:14 am
2 Cells Sharing and Changing Same ECF Concentrations

Last post by Darshan « Wed Jun 28, 2017 3:31 pm
Replies: 4
by Darshan » Wed Jun 21, 2017 7:55 am

4 Replies

7285 Views

Last post by Darshan
Wed Jun 28, 2017 3:31 pm
Mapping of hoc toploogy and 3D morphology

Last post by ted « Fri Jun 09, 2017 8:12 am
Replies: 1
by shyam_u2 » Tue Jun 06, 2017 3:10 pm

1 Replies

6031 Views

Last post by ted
Fri Jun 09, 2017 8:12 am
Combining different model sources for my own model.

Last post by Roman « Mon Oct 17, 2016 12:59 pm
Replies: 2
by Roman » Tue Oct 11, 2016 2:24 pm

2 Replies

6854 Views

Last post by Roman
Mon Oct 17, 2016 12:59 pm
Adding myelin to realistic morphology

Last post by Aman_Aberra « Wed Jul 20, 2016 10:37 am
Replies: 4
by Aman_Aberra » Mon Jul 18, 2016 10:27 am

4 Replies

7812 Views

Last post by Aman_Aberra
Wed Jul 20, 2016 10:37 am
tapered dendrites

Last post by fabien tell « Mon Jun 13, 2016 11:02 am
Replies: 7
by fabien tell » Wed Jun 08, 2016 11:43 am

7 Replies

8197 Views

Last post by fabien tell
Mon Jun 13, 2016 11:02 am
rotate a .asc neurolucida morphology file and save it

Last post by youngJose « Tue May 17, 2016 8:13 am
Replies: 2
by youngJose » Tue May 10, 2016 8:22 am

2 Replies

6340 Views

Last post by youngJose
Tue May 17, 2016 8:13 am
swc to hoc conversion

Last post by Annik « Thu Apr 14, 2016 6:11 pm
Replies: 4
by Annik » Fri Apr 08, 2016 3:09 pm

4 Replies

8210 Views

Last post by Annik
Thu Apr 14, 2016 6:11 pm
delete a section from a created neuron

Last post by youngJose « Sun Apr 03, 2016 11:13 am
Replies: 6
by youngJose » Fri Mar 25, 2016 2:24 pm

6 Replies

7606 Views

Last post by youngJose
Sun Apr 03, 2016 11:13 am
Exporting a morphology ASCII file from neuron

Last post by ted « Thu Mar 31, 2016 10:22 am
Replies: 1
by sandeepb » Thu Mar 31, 2016 6:47 am

1 Replies

6382 Views

Last post by ted
Thu Mar 31, 2016 10:22 am
setting non uniform conductances in a section

Last post by ted « Mon Mar 14, 2016 4:51 pm
Replies: 6
by fabien tell » Mon Mar 14, 2016 9:06 am

6 Replies

7098 Views

Last post by ted
Mon Mar 14, 2016 4:51 pm
Synaptic Connections on Spinal Motoneurons

Last post by Alexk « Fri Feb 19, 2016 8:23 am

by Alexk » Fri Feb 19, 2016 8:23 am

0 Replies

10799 Views

Last post by Alexk
Fri Feb 19, 2016 8:23 am
Exporting a hoc file from import3d

Last post by ted « Sun Jan 03, 2016 3:53 pm
Replies: 5
by sandeepb » Fri Jan 01, 2016 11:35 am

5 Replies

7209 Views

Last post by ted
Sun Jan 03, 2016 3:53 pm
Adding a synapse

Last post by ted « Mon Dec 28, 2015 12:49 pm
Replies: 2
by maria.kesa » Mon Dec 28, 2015 11:33 am

2 Replies

6730 Views

Last post by ted
Mon Dec 28, 2015 12:49 pm
Adding a spine correctly

Last post by MBeining « Tue Dec 15, 2015 2:34 am
Replies: 2
by MBeining » Mon Dec 14, 2015 7:27 am

2 Replies

7284 Views

Last post by MBeining
Tue Dec 15, 2015 2:34 am
making a template from a neuromorpho morphology

Last post by ted « Tue Dec 01, 2015 2:02 pm
Replies: 5
by maria.kesa » Sun Nov 29, 2015 1:18 pm

5 Replies

9790 Views

Last post by ted
Tue Dec 01, 2015 2:02 pm
Issues with ion valence?

Last post by ted « Thu Nov 19, 2015 2:58 pm
Replies: 3
by Annik » Wed Nov 18, 2015 4:14 pm

3 Replies

7204 Views

Last post by ted
Thu Nov 19, 2015 2:58 pm

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