KSChan Class Reference

#include <kschan.h>

Collaboration diagram for KSChan:

[legend]

List of all members.

Public Member Functions
	KSChan (Object *, boolean is_point=false)
virtual	~KSChan ()
virtual void	alloc (Prop *)
virtual void	init (int, Node **, double **, Datum **, NrnThread *)
virtual void	cur (int, Node **, double **, Datum **)
virtual void	jacob (int, Node **, double **, Datum **)
virtual void	state (int, Node **, double **, Datum **, NrnThread *)
void	add_channel (char **)
virtual int	count ()
virtual void	map (int, double **, double **, double *, Datum *, double *)
virtual void	spec (int, Node **, double **, Datum **)
virtual void	matsol (int, Node **, double **, Datum **, NrnThread *)
virtual void	cv_sc_update (int, Node **, double **, Datum **, NrnThread *)
double	conductance (double gmax, double *state)
int	state (const char *name)
const char *	state (int index)
int	trans_index (const char *src, const char *target)
int	trans_index (int src, int target)
int	gate_index (int state_index)
boolean	is_point ()
boolean	is_single ()
void	set_single (boolean, boolean update=true)
void	destroy_pnt (Point_process *)
int	nsingle (Point_process *)
void	nsingle (Point_process *, int)
double	alpha (double v, int, int)
double	beta (double v, int, int)
void	setstructure (Vect *)
void	setname (const char *)
void	setsname (int, const char *)
void	setion (const char *)
void	setligand (int i, const char *)
void	settype (KSTransition *, int type, const char *)
void	setivrelation (int)
KSState *	add_hhstate (const char *)
KSState *	add_ksstate (int igate, const char *)
void	remove_state (int)
KSTransition *	add_transition (int src, int target, const char *ligand)
void	remove_transition (int)
void	setcond ()
void	power (KSGateComplex *, int)
void	usetable (boolean, int size, double vmin, double vmax)
void	usetable (boolean)
int	usetable (double *vmin, double *vmax)
boolean	usetable ()
void	check_table_thread (NrnThread *)
Public Attributes
CopyString	name_
CopyString	ion_
double	gmax_deflt_
double	erev_deflt_
int	cond_model_
KSIv *	iv_relation_
int	ngate_
int	ntrans_
int	ivkstrans_
int	iligtrans_
int	nhhstate_
int	nksstate_
int	nstate_
KSState *	state_
KSGateComplex *	gc_
KSTransition *	trans_
Symbol *	ion_sym_
int	nligand_
Symbol **	ligands_
Object *	obj_
KSSingle *	single_
Private Member Functions
void	free1 ()
void	build ()
void	setupmat ()
void	fillmat (double v, Datum *pd)
void	mat_dt (double dt, double *p)
void	solvemat (double *)
void	mulmat (double *, double *)
void	ion_consist ()
void	ligand_consist (int, int, Prop *, Node *)
Prop *	needion (Symbol *, Node *, Prop *)
void	state_consist (int shift=0)
void	sname_install ()
Symbol *	looksym (const char *, Symbol *tmplt=nil)
Symbol *	installsym (const char *, int, Symbol *tmplt=nil)
void	freesym (Symbol *, Symbol *tmplt=nil)
Symbol **	newppsym (int)
void	delete_schan_node_data ()
void	alloc_schan_node_data ()
void	update_prop ()
KSState *	state_insert (int i, const char *name, double frac)
void	state_remove (int i)
KSGateComplex *	gate_insert (int ig, int is, int power)
void	gate_remove (int i)
KSTransition *	trans_insert (int i, int src, int target)
void	trans_remove (int i)
void	check_struct ()
Private Attributes
int	state_size_
int	gate_size_
int	trans_size_
boolean	is_point_
boolean	is_single_
int	pointtype_
int	mechtype_
int	cvode_ieq_
Symbol *	mechsym_
Symbol *	rlsym_
char *	mat_
double **	elms_
double **	diag_
int	dsize_
int	psize_
int	soffset_
int	gmaxoffset_
int	ppoff_
double	vmin_
double	vmax_
double	dvinv_
double	dtsav_
int	hh_tab_size_
boolean	usetable_

---

Constructor & Destructor Documentation

KSChan::KSChan	(	Object *	obj,
		boolean	is_point = false
	)

References buf, build(), cond_model_, diag_, elms_, erev_deflt_, gate_size_, gc_, gmax_deflt_, gmaxoffset_, hoc_obj_ref(), iligtrans_, ion_, ion_sym_, is_point(), is_point_, is_single(), is_single_, iv_relation_, ivkstrans_, ligands_, mat_, mechsym_, mechtype_, name_, ngate_, nhhstate_, nil, nksstate_, nligand_, nstate_, ntrans_, obj_, ppoff_, rlsym_, single_, soffset_, state_, state_size_, trans_, trans_size_, and usetable().

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KSChan::~KSChan

(

)

[virtual]

---

Member Function Documentation

void KSChan::add_channel

(

char **

m

)

References count(), hoc_built_in_symlist, hoc_register_cvode(), hoc_symlist, is_point(), mechtype_, nil, nrn_get_mechtype(), nrn_init(), nrn_jacob(), nrn_state(), point_register_mech(), pointtype_, and register_mech().

Referenced by build().

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KSState * KSChan::add_hhstate

(

const char *

name

)

References check_struct(), gate_insert(), gc_, ivkstrans_, KSTransition::ligand_index_, ngate_, nhhstate_, ntrans_, set_single(), setupmat(), KSGateComplex::sindex_, sname_install(), KSTransition::src_, state_, state_consist(), state_insert(), KSTransition::target_, trans_, trans_insert(), KSTransition::type_, and usetable().

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KSState * KSChan::add_ksstate	(	int	igate,
		const char *	name
	)

References check_struct(), gate_insert(), gc_, ivkstrans_, ngate_, nhhstate_, nksstate_, KSGateComplex::nstate_, nstate_, ntrans_, set_single(), setupmat(), KSGateComplex::sindex_, sname_install(), KSTransition::src_, state_, state_consist(), state_insert(), KSTransition::target_, trans_, and usetable().

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KSTransition * KSChan::add_transition	(	int	src,
		int	target,
		const char *	ligand
	)

References assert, check_struct(), iligtrans_, KSTransition::ligand_index_, nil, ntrans_, set_single(), setupmat(), trans_, trans_insert(), KSTransition::type_, and usetable().

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void KSChan::alloc

(

Prop *

prop

)

[virtual]

References Datum::_pvoid, KSSingle::alloc(), assert, cond_model_, Prop::dparam, erev_deflt_, gmax_deflt_, gmaxoffset_, ion_sym_, is_point(), ligands_, need_memb(), nil, nligand_, nrn_point_prop_, nrn_promote(), nrn_prop_data_alloc(), nrn_prop_datum_alloc(), NSingleIndex, nstate_, Prop::param, Prop::param_size, ppoff_, Datum::pval, single_, soffset_, and Prop::type.

Referenced by setion(), setligand(), and settype().

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void KSChan::alloc_schan_node_data

(

)

[private]

References KSSingle::alloc(), ITERATE, mechsym_, OBJ, Point_process::prop, single_, soffset_, and Symbol::u.

Referenced by set_single().

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double KSChan::alpha	(	double	v,
		int	,
		int
	)			[inline]

double KSChan::beta	(	double	v,
		int	,
		int
	)			[inline]

void KSChan::build

(

)

[private]

References add_channel(), buf, hoc_execerror(), ion_, ion_reg(), ion_sym_, is_point(), looksym(), mechsym_, name_, rlsym_, setcond(), sname_install(), and soffset_.

Referenced by KSChan().

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void KSChan::check_struct

(

)

[private]

References assert, gc_, iligtrans_, ivkstrans_, KSTransition::ligand_index_, ngate_, nhhstate_, nksstate_, nligand_, nstate_, ntrans_, KSTransition::obj_, KSState::obj_, state_, and trans_.

Referenced by add_hhstate(), add_ksstate(), add_transition(), remove_state(), remove_transition(), setstructure(), and settype().

void KSChan::check_table_thread

(

NrnThread *

nt

)

References NrnThread::_dt, dtsav_, hh_tab_size_, KSTransition::hh_table_make(), trans_, usetable_, vmax_, and vmin_.

Referenced by usetable().

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double KSChan::conductance	(	double	gmax,
		double *	state
	)

References KSGateComplex::conductance(), gc_, ngate_, and state_.

Referenced by cur().

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int KSChan::count

(

)

[virtual]

References nstate_.

Referenced by add_channel().

void KSChan::cur	(	int	n,
		Node **	nd,
		double **	pp,
		Datum **	ppd
	)			[virtual]

References conductance(), KSIv::cur(), g, gmaxoffset_, iv_relation_, NODERHS, and NODEV.

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void KSChan::cv_sc_update	(	int	n,
		Node **	nd,
		double **	pp,
		Datum **	ppd,
		NrnThread *	nt
	)			[virtual]

References KSSingle::cv_update(), NSingleIndex, nstate_, and single_.

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void KSChan::delete_schan_node_data

(

)

[private]

References Datum::_pvoid, Prop::dparam, ITERATE, mechsym_, nil, OBJ, Point_process::prop, and Symbol::u.

Referenced by set_single().

void KSChan::destroy_pnt

(

Point_process *

pp

)

References Datum::_pvoid, destroy_point_process(), Prop::dparam, nil, Point_process::prop, and single_.

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void KSChan::fillmat	(	double	v,
		Datum *	pd
	)			[private]

References KSTransition::ab(), KSTransition::alpha(), KSTransition::beta(), elms_, iligtrans_, ivkstrans_, mat_, ntrans_, and trans_.

Referenced by init(), matsol(), spec(), and state().

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void KSChan::free1

(

)

[private]

References diag_, elms_, gate_size_, gc_, iv_relation_, ligands_, mat_, ngate_, nil, nstate_, ntrans_, obj_, state_, state_size_, trans_, and trans_size_.

Referenced by setstructure().

void KSChan::freesym	(	Symbol *	s,
		Symbol *	tmplt = nil
	)			[private]

References assert, Symbol::extra, hoc_built_in_symlist, hoc_unlink_symbol(), Symbol::name, HocSymExtension::parmlimits, Symbol::type, Symbol::u, and HocSymExtension::units.

Referenced by setion(), sname_install(), and update_prop().

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int KSChan::gate_index

(

int

state_index

)

References gc_, and ngate_.

KSGateComplex * KSChan::gate_insert	(	int	ig,
		int	is,
		int	power
	)			[private]

References gate_size_, gc_, KSGateComplex::index_, KSGateComplex::ks_, ngate_, KSGateComplex::nstate_, KSGateComplex::obj_, obj_, KSGateComplex::power_, KSGateComplex::sindex_, and usetable().

Referenced by add_hhstate(), and add_ksstate().

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void KSChan::gate_remove

(

int

i

)

[private]

References gc_, KSGateComplex::index_, ngate_, nil, KSGateComplex::obj_, obj_, and usetable().

Referenced by remove_state().

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void KSChan::init	(	int	n,
		Node **	nd,
		double **	pp,
		Datum **	ppd,
		NrnThread *	nt
	)			[virtual]

References fillmat(), gc_, KSTransition::inf(), KSSingle::init(), int, is_single(), mat_dt(), ngate_, nhhstate_, nksstate_, NODEV, KSSingleNodeData::nsingle_, NSingleIndex, nstate_, KSGateComplex::sindex_, single_, soffset_, solvemat(), and trans_.

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Symbol * KSChan::installsym	(	const char *	name,
		int	type,
		Symbol *	tmplt = nil
	)			[private]

References assert, hoc_built_in_symlist, hoc_install(), Symbol::type, and Symbol::u.

Referenced by setion(), sname_install(), and update_prop().

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void KSChan::ion_consist

(

)

[private]

References cond_model_, Prop::dparam, erealloc, ForAllSections, iligtrans_, ion_sym_, KSTransition::lig2pd(), ligand_consist(), nd, needion(), Prop::next, nligand_, Section::nnode, nrn_promote(), ntrans_, Prop::param, Section::pnode, ppoff_, Node::prop, Datum::pval, rlsym_, sec, Symbol::subtype, trans_, and Prop::type.

Referenced by setion(), setligand(), settype(), and update_prop().

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boolean KSChan::is_point

(

)

[inline]

References is_point_.

Referenced by add_channel(), alloc(), build(), KSChan(), set_single(), setcond(), setion(), setname(), sname_install(), and update_prop().

boolean KSChan::is_single

(

)

[inline]

References is_single_.

Referenced by init(), KSChan(), matsol(), power(), set_single(), spec(), state(), and update_prop().

void KSChan::jacob	(	int	n,
		Node **	nd,
		double **	pp,
		Datum **	ppd
	)			[virtual]

References gmaxoffset_, iv_relation_, KSIv::jacob(), NODED, and NODEV.

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void KSChan::ligand_consist	(	int	j,
		int	poff,
		Prop *	p,
		Node *	nd
	)			[private]

References Prop::dparam, ligands_, needion(), nrn_promote(), Prop::param, and Datum::pval.

Referenced by ion_consist().

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Symbol * KSChan::looksym	(	const char *	name,
		Symbol *	tmplt = nil
	)			[private]

References assert, hoc_built_in_symlist, hoc_table_lookup(), hoc_top_level_symlist, Symbol::name, Symbol::type, and Symbol::u.

Referenced by build(), setion(), setligand(), setname(), settype(), sname_install(), and update_prop().

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void KSChan::map	(	int	ieq,
		double **	pv,
		double **	pvdot,
		double *	p,
		Datum *	pd,
		double *	atol
	)			[virtual]

References nstate_.

void KSChan::mat_dt	(	double	dt,
		double *	p
	)			[private]

References diag_, and nksstate_.

Referenced by init(), matsol(), and state().

void KSChan::matsol	(	int	n,
		Node **	nd,
		double **	p,
		Datum **	ppd,
		NrnThread *	nt
	)			[virtual]

References NrnThread::_dt, fillmat(), is_single(), mat_dt(), nksstate_, NODEV, NSingleIndex, nstate_, solvemat(), KSTransition::tau(), and trans_.

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void KSChan::mulmat	(	double *	s,
		double *	ds
	)			[private]

References mat_.

Referenced by spec().

Prop * KSChan::needion	(	Symbol *	s,
		Node *	nd,
		Prop *	pm
	)			[private]

References Prop::next, Node::prop, prop_alloc(), Symbol::subtype, and Prop::type.

Referenced by ion_consist(), and ligand_consist().

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Symbol ** KSChan::newppsym

(

int

n

)

[private]

References hoc_Emalloc(), and hoc_malchk().

Referenced by setion(), sname_install(), and update_prop().

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void KSChan::nsingle	(	Point_process *	pp,
		int	n
	)

References Datum::_pvoid, Prop::dparam, if(), KSSingleNodeData::nsingle_, and Point_process::prop.

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int KSChan::nsingle

(

Point_process *

pp

)

References Datum::_pvoid, Prop::dparam, if(), KSSingleNodeData::nsingle_, and Point_process::prop.

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void KSChan::power	(	KSGateComplex *	gc,
		int	p
	)

References is_single(), KSGateComplex::power_, and set_single().

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void KSChan::remove_state

(

int

is

)

References check_struct(), gate_remove(), gc_, ivkstrans_, ngate_, nhhstate_, KSGateComplex::nstate_, nstate_, ntrans_, set_single(), setupmat(), KSGateComplex::sindex_, sname_install(), KSTransition::src_, state_consist(), state_remove(), KSTransition::target_, trans_, trans_remove(), and usetable().

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void KSChan::remove_transition

(

int

it

)

References assert, check_struct(), ivkstrans_, set_single(), setupmat(), trans_remove(), and usetable().

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void KSChan::set_single	(	boolean	b,
		boolean	update = true
	)

References alloc_schan_node_data(), delete_schan_node_data(), gc_, hoc_warning(), is_point(), is_single(), is_single_, mechtype_, memb_func, ngate_, nhhstate_, nil, nksstate_, single_, and update_prop().

Referenced by add_hhstate(), add_ksstate(), add_transition(), power(), remove_state(), remove_transition(), setstructure(), and settype().

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void KSChan::setcond

(

)

References cond_model_, gmaxoffset_, hoc_symbol_units(), ion_sym_, is_point(), iv_relation_, Symbol::name, nrn_ion_charge(), ppoff_, Symbol::ppsym, rlsym_, and Symbol::u.

Referenced by build(), setion(), setstructure(), and update_prop().

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void KSChan::setion

(

const char *

s

)

References alloc(), Memb_func::alloc, buf, freesym(), gmaxoffset_, hoc_execerror(), iligtrans_, installsym(), ion_, ion_consist(), ion_sym_, is_point(), KSTransition::lig2pd(), looksym(), mechsym_, memb_func, Symbol::name, newppsym(), nil, ntrans_, ppoff_, Symbol::ppsym, rlsym_, Symbol::rng, Symbol::s_varn, setcond(), soffset_, state_consist(), Symbol::subtype, trans_, Symbol::type, and Symbol::u.

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void KSChan::setivrelation

(

int

)

void KSChan::setligand	(	int	i,
		const char *	lig
	)

References alloc(), Memb_func::alloc, buf, hoc_execerror(), ion_consist(), ion_reg(), ligands_, looksym(), mechsym_, memb_func, state_consist(), Symbol::subtype, and Symbol::type.

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void KSChan::setname

(

const char *

s

)

References hoc_Emalloc(), hoc_malchk(), is_point(), looksym(), mechsym_, Symbol::name, name_, Symbol::ppsym, rlsym_, Symbol::s_varn, strstr(), and Symbol::u.

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void KSChan::setsname	(	int	i,
		const char *	s
	)

References KSState::name_, sname_install(), and state_.

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void KSChan::setstructure

(

Vect *

vec

)

References buf, check_struct(), cond_model_, KSState::f_, free1(), gate_size_, gc_, iligtrans_, KSTransition::index_, KSGateComplex::index_, KSState::index_, int, ion_sym_, ivkstrans_, KSTransition::ks_, KSGateComplex::ks_, KSState::ks_, KSTransition::lig2pd(), KSTransition::ligand_index_, ligands_, mechsym_, KSState::name_, ngate_, nhhstate_, nil, nksstate_, nligand_, KSGateComplex::nstate_, nstate_, ntrans_, obj_, KSGateComplex::power_, ppoff_, set_single(), setcond(), setupmat(), KSGateComplex::sindex_, sname_install(), KSTransition::src_, state_, state_consist(), state_size_, KSTransition::target_, trans_, trans_size_, KSTransition::type_, and usetable().

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void KSChan::settype	(	KSTransition *	t,
		int	type,
		const char *	lig
	)

References alloc(), Memb_func::alloc, assert, buf, check_struct(), KSTransition::f0, KSTransition::f1, hoc_execerror(), hoc_object_name(), iligtrans_, KSTransition::index_, ion_consist(), ion_reg(), KSTransition::ligand_index_, ligands_, looksym(), memb_func, move(), nil, nligand_, ntrans_, obj_, KSTransition::obj_, set_single(), setupmat(), KSTransition::src_, state_, state_consist(), Symbol::subtype, KSTransition::target_, trans_, trans_insert(), trans_remove(), Symbol::type, KSTransition::type_, and usetable().

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void KSChan::setupmat

(

)

[private]

References diag_, elms_, err, hoc_execerror(), ivkstrans_, mat_, nhhstate_, nil, nksstate_, ntrans_, KSTransition::src_, t, KSTransition::target_, and trans_.

Referenced by add_hhstate(), add_ksstate(), add_transition(), remove_state(), remove_transition(), setstructure(), and settype().

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void KSChan::sname_install

(

)

[private]

References buf, freesym(), installsym(), is_point(), looksym(), mechsym_, Symbol::name, KSState::name_, newppsym(), nil, nstate_, Symbol::ppsym, rlsym_, Symbol::rng, Symbol::s_varn, soffset_, state_, Symbol::subtype, and Symbol::u.

Referenced by add_hhstate(), add_ksstate(), build(), remove_state(), setsname(), and setstructure().

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void KSChan::solvemat

(

double *

s

)

[private]

References e, hoc_execerror(), and mat_.

Referenced by init(), matsol(), and state().

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void KSChan::spec	(	int	n,
		Node **	nd,
		double **	p,
		Datum **	ppd
	)			[virtual]

References fillmat(), KSTransition::inftau(), is_single(), mulmat(), nksstate_, NODEV, NSingleIndex, nstate_, and trans_.

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const char * KSChan::state

(

int

index

)

References state_, and KSState::string().

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int KSChan::state

(

const char *

name

)

References nstate_, and state_.

void KSChan::state	(	int	n,
		Node **	nd,
		double **	pp,
		Datum **	ppd,
		NrnThread *	nt
	)			[virtual]

References NrnThread::_dt, dvinv_, Exp, fillmat(), hh_tab_size_, KSTransition::inftau(), KSTransition::inftau_hh_table(), int, is_single(), mat_dt(), nhhstate_, nksstate_, NODEV, NSingleIndex, nstate_, single_, soffset_, solvemat(), KSSingle::state(), tau, trans_, usetable_, vmin_, and y.

Referenced by state_insert().

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void KSChan::state_consist

(

int

shift = 0

)

[private]

References erealloc, ForAllSections, nd, Prop::next, Section::nnode, notify_freed_val_array(), nstate_, Prop::param, Prop::param_size, Section::pnode, Node::prop, rlsym_, sec, soffset_, Symbol::subtype, Prop::type, and v_structure_change.

Referenced by add_hhstate(), add_ksstate(), remove_state(), setion(), setligand(), setstructure(), settype(), and update_prop().

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KSState * KSChan::state_insert	(	int	i,
		const char *	name,
		double	frac
	)			[private]

References KSState::f_, KSState::index_, KSState::ks_, KSState::name_, nhhstate_, nksstate_, nstate_, KSState::obj_, obj_, state(), state_, state_size_, and usetable().

Referenced by add_hhstate(), and add_ksstate().

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void KSChan::state_remove

(

int

i

)

[private]

References KSState::index_, nhhstate_, nil, nksstate_, nstate_, KSState::obj_, obj_, state_, and usetable().

Referenced by remove_state().

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int KSChan::trans_index	(	int	src,
		int	target
	)

References ntrans_, and trans_.

int KSChan::trans_index	(	const char *	src,
		const char *	target
	)

References ntrans_, state_, and trans_.

KSTransition * KSChan::trans_insert	(	int	i,
		int	src,
		int	target
	)			[private]

References KSTransition::f0, KSTransition::f1, iligtrans_, KSTransition::index_, ivkstrans_, KSTransition::ks_, nhhstate_, nil, ntrans_, KSTransition::obj_, obj_, KSTransition::src_, KSTransition::target_, trans_, trans_size_, and usetable().

Referenced by add_hhstate(), add_transition(), and settype().

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void KSChan::trans_remove

(

int

i

)

[private]

References iligtrans_, KSTransition::index_, ivkstrans_, nil, ntrans_, KSTransition::obj_, obj_, trans_, and usetable().

Referenced by remove_state(), remove_transition(), and settype().

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void KSChan::update_prop

(

)

[private]

References CONST, dsize_, freesym(), gmaxoffset_, installsym(), ion_consist(), ion_sym_, is_point(), is_single(), looksym(), mechsym_, newppsym(), nil, nligand_, NSingleIndex, nstate_, ppoff_, Symbol::ppsym, psize_, rlsym_, Symbol::rng, Symbol::s_varn, setcond(), soffset_, state_consist(), Symbol::subtype, and Symbol::u.

Referenced by set_single().

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boolean KSChan::usetable

(

)

[inline]

References usetable_.

Referenced by add_hhstate(), add_ksstate(), add_transition(), gate_insert(), gate_remove(), KSChan(), remove_state(), remove_transition(), setstructure(), settype(), state_insert(), state_remove(), trans_insert(), trans_remove(), and usetable().

int KSChan::usetable	(	double *	vmin,
		double *	vmax
	)

References hh_tab_size_, vmax_, and vmin_.

void KSChan::usetable

(

boolean

use

)

References check_table_thread(), dtsav_, mechtype_, memb_func, nrn_mk_table_check(), nrn_threads, Memb_func::thread_table_check_, and usetable_.

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void KSChan::usetable	(	boolean	use,
		int	size,
		double	vmin,
		double	vmax
	)

References dvinv_, hh_tab_size_, usetable(), vmax_, and vmin_.

Referenced by KSTransition::lig2pd(), and KSTransition::setf().

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Member Data Documentation

int KSChan::cond_model_

Referenced by alloc(), ion_consist(), KSChan(), setcond(), and setstructure().

int KSChan::cvode_ieq_ [private]

double** KSChan::diag_ [private]

Referenced by free1(), KSChan(), mat_dt(), and setupmat().

int KSChan::dsize_ [private]

Referenced by update_prop().

double KSChan::dtsav_ [private]

Referenced by check_table_thread(), and usetable().

double KSChan::dvinv_ [private]

Referenced by state(), and usetable().

double** KSChan::elms_ [private]

Referenced by fillmat(), free1(), KSChan(), and setupmat().

double KSChan::erev_deflt_

Referenced by alloc(), and KSChan().

int KSChan::gate_size_ [private]

Referenced by free1(), gate_insert(), KSChan(), and setstructure().

KSGateComplex* KSChan::gc_

Referenced by add_hhstate(), add_ksstate(), check_struct(), conductance(), free1(), gate_index(), gate_insert(), gate_remove(), init(), KSChan(), remove_state(), set_single(), and setstructure().

double KSChan::gmax_deflt_

Referenced by alloc(), and KSChan().

int KSChan::gmaxoffset_ [private]

Referenced by alloc(), cur(), jacob(), KSChan(), setcond(), setion(), and update_prop().

int KSChan::hh_tab_size_ [private]

Referenced by check_table_thread(), state(), and usetable().

int KSChan::iligtrans_

Referenced by add_transition(), check_struct(), fillmat(), ion_consist(), KSChan(), setion(), setstructure(), settype(), trans_insert(), and trans_remove().

CopyString KSChan::ion_

Referenced by build(), KSChan(), and setion().

Symbol* KSChan::ion_sym_

Referenced by alloc(), build(), ion_consist(), KSChan(), setcond(), setion(), setstructure(), and update_prop().

boolean KSChan::is_point_ [private]

Referenced by is_point(), and KSChan().

boolean KSChan::is_single_ [private]

Referenced by is_single(), KSChan(), and set_single().

KSIv* KSChan::iv_relation_

Referenced by cur(), free1(), jacob(), KSChan(), and setcond().

int KSChan::ivkstrans_

Referenced by add_hhstate(), add_ksstate(), check_struct(), fillmat(), KSChan(), remove_state(), remove_transition(), setstructure(), setupmat(), trans_insert(), and trans_remove().

Symbol** KSChan::ligands_

Referenced by alloc(), free1(), KSChan(), ligand_consist(), setligand(), setstructure(), and settype().

char* KSChan::mat_ [private]

Referenced by fillmat(), free1(), KSChan(), mulmat(), setupmat(), and solvemat().

Symbol* KSChan::mechsym_ [private]

Referenced by alloc_schan_node_data(), build(), delete_schan_node_data(), KSChan(), setion(), setligand(), setname(), setstructure(), sname_install(), and update_prop().

int KSChan::mechtype_ [private]

Referenced by add_channel(), KSChan(), set_single(), and usetable().

CopyString KSChan::name_

Referenced by build(), KSChan(), and setname().

int KSChan::ngate_

Referenced by add_hhstate(), add_ksstate(), check_struct(), conductance(), free1(), gate_index(), gate_insert(), gate_remove(), init(), KSChan(), remove_state(), set_single(), and setstructure().

int KSChan::nhhstate_

Referenced by add_hhstate(), add_ksstate(), check_struct(), init(), KSChan(), remove_state(), set_single(), setstructure(), setupmat(), state(), state_insert(), state_remove(), and trans_insert().

int KSChan::nksstate_

Referenced by add_ksstate(), check_struct(), init(), KSChan(), mat_dt(), matsol(), set_single(), setstructure(), setupmat(), spec(), state(), state_insert(), and state_remove().

int KSChan::nligand_

Referenced by alloc(), check_struct(), ion_consist(), KSChan(), setstructure(), settype(), and update_prop().

int KSChan::nstate_

Referenced by add_ksstate(), alloc(), check_struct(), count(), cv_sc_update(), free1(), init(), KSChan(), KSSingle::KSSingle(), map(), matsol(), remove_state(), setstructure(), sname_install(), spec(), state(), state_consist(), state_insert(), state_remove(), and update_prop().

int KSChan::ntrans_

Referenced by add_hhstate(), add_ksstate(), add_transition(), check_struct(), fillmat(), free1(), ion_consist(), KSChan(), KSSingle::KSSingle(), remove_state(), setion(), setstructure(), settype(), setupmat(), trans_index(), trans_insert(), and trans_remove().

Object* KSChan::obj_

Referenced by free1(), gate_insert(), gate_remove(), KSChan(), setstructure(), settype(), state_insert(), state_remove(), trans_insert(), and trans_remove().

int KSChan::pointtype_ [private]

Referenced by add_channel().

int KSChan::ppoff_ [private]

Referenced by alloc(), ion_consist(), KSChan(), setcond(), setion(), setstructure(), and update_prop().

int KSChan::psize_ [private]

Referenced by update_prop().

Symbol* KSChan::rlsym_ [private]

Referenced by build(), ion_consist(), KSChan(), setcond(), setion(), setname(), sname_install(), state_consist(), and update_prop().

KSSingle* KSChan::single_

Referenced by alloc(), alloc_schan_node_data(), cv_sc_update(), destroy_pnt(), init(), KSChan(), set_single(), and state().

int KSChan::soffset_ [private]

Referenced by alloc(), alloc_schan_node_data(), build(), init(), KSChan(), setion(), sname_install(), state(), state_consist(), and update_prop().

KSState* KSChan::state_

Referenced by add_hhstate(), add_ksstate(), check_struct(), conductance(), free1(), KSChan(), setsname(), setstructure(), settype(), sname_install(), state(), state_insert(), state_remove(), and trans_index().

int KSChan::state_size_ [private]

Referenced by free1(), KSChan(), setstructure(), and state_insert().

KSTransition* KSChan::trans_

Referenced by add_hhstate(), add_ksstate(), add_transition(), check_struct(), check_table_thread(), fillmat(), free1(), init(), ion_consist(), KSChan(), KSSingle::KSSingle(), matsol(), remove_state(), setion(), setstructure(), settype(), setupmat(), spec(), state(), trans_index(), trans_insert(), and trans_remove().

int KSChan::trans_size_ [private]

Referenced by free1(), KSChan(), setstructure(), and trans_insert().

boolean KSChan::usetable_ [private]

Referenced by check_table_thread(), state(), and usetable().

double KSChan::vmax_ [private]

Referenced by check_table_thread(), and usetable().

double KSChan::vmin_ [private]

Referenced by check_table_thread(), state(), and usetable().

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The documentation for this class was generated from the following files:

• /home/hines/neuron/nrndox/src/nrniv/kschan.h
• /home/hines/neuron/nrndox/src/nrniv/kschan.cpp
• /home/hines/neuron/nrndox/src/nrniv/kssingle.cpp