KSTransition Class Reference

#include <kschan.h>

Collaboration diagram for KSTransition:

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List of all members.

Public Member Functions
	KSTransition ()
virtual	~KSTransition ()
void	setf (int direction, int type, Vect *vec, double vmin, double vmax)
double	alpha (double v)
double	beta (double v)
double	inf (double v)
double	tau (double v)
void	ab (double v, double &a, double &b)
void	ab (Vect *v, Vect *a, Vect *b)
void	inftau (double v, double &inf, double &tau)
void	inftau (Vect *v, Vect *inf, Vect *tau)
void	hh_table_make (double dt, int size=200, double vmin=-100., double vmax=50.)
boolean	usehhtable ()
void	inftau_hh_table (int i, double &inf, double &tau)
void	inftau_hh_table (int i, double x, double &inf, double &tau)
virtual double	alpha (Datum *)
virtual double	beta ()
void	lig2pd (int pdoff)
Public Attributes
Object *	obj_
int	index_
int	src_
int	target_
KSChan *	ks_
KSChanFunction *	f0
KSChanFunction *	f1
int	type_
int	ligand_index_
int	pd_index_
int	stoichiom_
Private Attributes
double *	inftab_
double *	tautab_
int	size1_

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Constructor & Destructor Documentation

KSTransition::KSTransition

(

)

References f0, f1, inftab_, nil, obj_, size1_, stoichiom_, and tautab_.

KSTransition::~KSTransition

(

)

[virtual]

References f0, f1, and hh_table_make().

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Member Function Documentation

void KSTransition::ab	(	Vect *	v,
		Vect *	a,
		Vect *	b
	)

References KSChanFunction::f(), f0, f1, t, KSChanFunction::type(), and type_.

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void KSTransition::ab	(	double	v,
		double &	a,
		double &	b
	)

References KSChanFunction::f(), f0, f1, t, KSChanFunction::type(), and type_.

Referenced by KSChan::fillmat().

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double KSTransition::alpha

(

Datum *

pd

)

[virtual]

References KSChanFunction::c(), f0, pd_index_, Datum::pval, and stoichiom_.

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double KSTransition::alpha

(

double

v

)

[inline]

References KSChanFunction::f(), f0, f1, and type_.

Referenced by KSChan::fillmat(), and KSSingleTrans::rate().

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double KSTransition::beta

(

)

[virtual]

References KSChanFunction::c(), and f1.

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double KSTransition::beta

(

double

v

)

[inline]

References KSChanFunction::f(), f0, f1, and type_.

Referenced by KSChan::fillmat(), and KSSingleTrans::rate().

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void KSTransition::hh_table_make	(	double	dt,
		int	size = 200,
		double	vmin = -100.,
		double	vmax = 50.
	)

References Exp, inftab_, inftau(), nil, size1_, and tautab_.

Referenced by KSChan::check_table_thread(), and ~KSTransition().

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double KSTransition::inf

(

double

v

)

[inline]

References KSChanFunction::f(), f0, f1, and type_.

Referenced by KSChan::init().

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void KSTransition::inftau	(	Vect *	v,
		Vect *	inf,
		Vect *	tau
	)

References KSChanFunction::f(), f0, f1, t, KSChanFunction::type(), and type_.

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void KSTransition::inftau	(	double	v,
		double &	inf,
		double &	tau
	)

References KSChanFunction::f(), f0, f1, t, KSChanFunction::type(), and type_.

Referenced by hh_table_make(), KSChan::spec(), and KSChan::state().

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void KSTransition::inftau_hh_table	(	int	i,
		double	x,
		double &	inf,
		double &	tau
	)			[inline]

References inftab_, and tautab_.

void KSTransition::inftau_hh_table	(	int	i,
		double &	inf,
		double &	tau
	)			[inline]

References inftab_, and tautab_.

Referenced by KSChan::state().

void KSTransition::lig2pd

(

int

pdoff

)

References assert, ks_, ligand_index_, pd_index_, type_, and KSChan::usetable().

Referenced by KSChan::ion_consist(), KSChan::setion(), and KSChan::setstructure().

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void KSTransition::setf	(	int	direction,
		int	type,
		Vect *	vec,
		double	vmin,
		double	vmax
	)

References f0, f1, ks_, KSChanFunction::new_function(), and KSChan::usetable().

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double KSTransition::tau

(

double

v

)

[inline]

References KSChanFunction::f(), f0, f1, and type_.

Referenced by KSChan::matsol().

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boolean KSTransition::usehhtable

(

)

[inline]

References size1_.

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Member Data Documentation

KSChanFunction* KSTransition::f0

Referenced by ab(), alpha(), beta(), inf(), inftau(), KSTransition(), setf(), KSChan::settype(), tau(), KSChan::trans_insert(), and ~KSTransition().

KSChanFunction* KSTransition::f1

Referenced by ab(), alpha(), beta(), inf(), inftau(), KSTransition(), setf(), KSChan::settype(), tau(), KSChan::trans_insert(), and ~KSTransition().

int KSTransition::index_

Referenced by KSChan::setstructure(), KSChan::settype(), KSChan::trans_insert(), and KSChan::trans_remove().

double* KSTransition::inftab_ [private]

Referenced by hh_table_make(), inftau_hh_table(), and KSTransition().

KSChan* KSTransition::ks_

Referenced by lig2pd(), setf(), KSChan::setstructure(), and KSChan::trans_insert().

int KSTransition::ligand_index_

Referenced by KSChan::add_hhstate(), KSChan::add_transition(), KSChan::check_struct(), lig2pd(), KSChan::setstructure(), and KSChan::settype().

Object* KSTransition::obj_

Referenced by KSChan::check_struct(), KSTransition(), KSChan::settype(), KSChan::trans_insert(), and KSChan::trans_remove().

int KSTransition::pd_index_

Referenced by alpha(), and lig2pd().

int KSTransition::size1_ [private]

Referenced by hh_table_make(), KSTransition(), and usehhtable().

int KSTransition::src_

Referenced by KSChan::add_hhstate(), KSChan::add_ksstate(), KSSingle::KSSingle(), KSChan::remove_state(), KSChan::setstructure(), KSChan::settype(), KSChan::setupmat(), and KSChan::trans_insert().

int KSTransition::stoichiom_

Referenced by alpha(), and KSTransition().

int KSTransition::target_

Referenced by KSChan::add_hhstate(), KSChan::add_ksstate(), KSSingle::KSSingle(), KSChan::remove_state(), KSChan::setstructure(), KSChan::settype(), KSChan::setupmat(), and KSChan::trans_insert().

double* KSTransition::tautab_ [private]

Referenced by hh_table_make(), inftau_hh_table(), and KSTransition().

int KSTransition::type_

Referenced by ab(), KSChan::add_hhstate(), KSChan::add_transition(), alpha(), beta(), inf(), inftau(), KSSingle::KSSingle(), lig2pd(), KSSingleTrans::rate(), KSChan::setstructure(), KSChan::settype(), and tau().

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The documentation for this class was generated from the following files:

• /home/hines/neuron/nrndox/src/nrniv/kschan.h
• /home/hines/neuron/nrndox/src/nrniv/kschan.cpp