NEURON + Python

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Use NEURON's native GUI tools with Python!

Last post by ted « Fri Sep 27, 2019 11:23 am
Replies: 2
by ted » Tue Aug 08, 2017 2:48 pm

2 Replies

13502 Views

Last post by ted
Fri Sep 27, 2019 11:23 am
More NEURON + Python documentation

Last post by ramcdougal « Wed Oct 24, 2018 7:07 am
Replies: 6
by ted » Mon Mar 24, 2008 10:17 am

6 Replies

26255 Views

Last post by ramcdougal
Wed Oct 24, 2018 7:07 am
More NEURON + Python resources

Last post by wjbeaver « Wed Dec 22, 2010 4:38 pm
Replies: 4
by mctavish » Wed Dec 01, 2010 3:13 pm

4 Replies

17580 Views

Last post by wjbeaver
Wed Dec 22, 2010 4:38 pm
Simulation Setup when using a List of NetCons, VecStims and Exp2Syn for multiple spike train stimulation

Last post by ted « Thu Apr 15, 2021 5:41 pm
Replies: 3
by Liz_Stan_88 » Wed Apr 14, 2021 4:03 pm

3 Replies

124 Views

Last post by ted
Thu Apr 15, 2021 5:41 pm
Myelin modeling

Last post by ted « Wed Apr 14, 2021 11:54 am
Replies: 3
by OronKotler » Thu Mar 25, 2021 3:13 am

3 Replies

122 Views

Last post by ted
Wed Apr 14, 2021 11:54 am
Impulse Response for all locations

Last post by ted « Tue Apr 13, 2021 11:45 am
Replies: 1
by tmoldwin » Tue Apr 13, 2021 7:35 am

1 Replies

62 Views

Last post by ted
Tue Apr 13, 2021 11:45 am
Assigning values to a mechanism over all sections in anatomically detailed model

Last post by ted « Tue Apr 13, 2021 1:08 am
Replies: 2
by aliaped » Mon Apr 12, 2021 10:30 am

2 Replies

74 Views

Last post by ted
Tue Apr 13, 2021 1:08 am
initbatser.py

Last post by ted « Wed Mar 24, 2021 10:26 am
Replies: 3
by margo.k3008 » Tue Mar 23, 2021 1:44 pm

3 Replies

77 Views

Last post by ted
Wed Mar 24, 2021 10:26 am
Kernel dies in Jupyter notebook when attempting to import NEURON

Last post by ted « Thu Mar 18, 2021 12:06 pm
Replies: 3
by oitani » Mon Mar 15, 2021 5:57 pm

3 Replies

120 Views

Last post by ted
Thu Mar 18, 2021 12:06 pm
hoc file is not a template

Last post by ted « Tue Mar 02, 2021 12:31 pm
Replies: 6
by alexandrapierri » Thu Feb 25, 2021 11:45 am

6 Replies

200 Views

Last post by ted
Tue Mar 02, 2021 12:31 pm
Update to __init__.py?

Last post by ramcdougal « Mon Mar 01, 2021 2:15 pm
Replies: 1
by cvaaga » Mon Mar 01, 2021 1:55 pm

1 Replies

88 Views

Last post by ramcdougal
Mon Mar 01, 2021 2:15 pm
Save data from a loop in data acquired from neuron

Last post by ted « Wed Feb 24, 2021 10:50 am
Replies: 1
by OronKotler » Wed Feb 24, 2021 8:51 am

1 Replies

72 Views

Last post by ted
Wed Feb 24, 2021 10:50 am
Mechanisms in nrnmech.dll do not seem to be loading in python script

Last post by ted « Wed Feb 10, 2021 9:59 am
Replies: 5
by Liz_Stan_88 » Tue Feb 09, 2021 11:22 am

5 Replies

263 Views

Last post by ted
Wed Feb 10, 2021 9:59 am
Record and fadvance instead of run

Last post by fkolbl « Thu Dec 31, 2020 11:23 am
Replies: 2
by fkolbl » Wed Dec 30, 2020 2:41 pm

2 Replies

287 Views

Last post by fkolbl
Thu Dec 31, 2020 11:23 am
Recording voltage across elements and using external stim Linear Circuit Builder

Last post by ted « Mon Nov 23, 2020 5:39 pm
Replies: 1
by ckelley » Fri Nov 20, 2020 3:28 pm

1 Replies

307 Views

Last post by ted
Mon Nov 23, 2020 5:39 pm
Modelling of subcellular signalling

Last post by ted « Wed Nov 18, 2020 10:42 pm
Replies: 1
by jofrony » Wed Nov 18, 2020 1:25 pm

1 Replies

232 Views

Last post by ted
Wed Nov 18, 2020 10:42 pm
External Stimuli not working

Last post by ted « Fri Oct 02, 2020 11:25 am
Replies: 1
by gladonias » Mon Aug 17, 2020 6:38 am

1 Replies

736 Views

Last post by ted
Fri Oct 02, 2020 11:25 am
implement Randles circuit in NEURON

Last post by breakwave922 « Wed Sep 30, 2020 2:36 pm
Replies: 3
by breakwave922 » Tue Sep 29, 2020 6:52 pm

3 Replies

422 Views

Last post by breakwave922
Wed Sep 30, 2020 2:36 pm
cell counting on an image with python

Last post by gladonias « Thu Sep 17, 2020 11:34 am
Replies: 4
by fpointeau » Mon Apr 13, 2020 11:54 am

4 Replies

2092 Views

Last post by gladonias
Thu Sep 17, 2020 11:34 am
Connect multiple cells using connection probabilities

Last post by gladonias « Thu Sep 17, 2020 11:26 am
Replies: 4
by ekkya » Sat Mar 03, 2018 10:15 am

4 Replies

4212 Views

Last post by gladonias
Thu Sep 17, 2020 11:26 am
Frequency dependent activation of g protein models

Last post by ted « Mon Sep 14, 2020 3:17 pm
Replies: 2
by jofrony » Tue Nov 12, 2019 6:20 am

2 Replies

3583 Views

Last post by ted
Mon Sep 14, 2020 3:17 pm
injecting continuous normally distributed noise in python

Last post by ted « Mon Sep 14, 2020 3:10 pm
Replies: 2
by thiank » Sun Aug 25, 2019 10:57 pm

2 Replies

1454 Views

Last post by ted
Mon Sep 14, 2020 3:10 pm
Netstim in automated repeating simulations

Last post by breakwave922 « Mon Sep 14, 2020 2:20 pm
Replies: 2
by breakwave922 » Sun Sep 13, 2020 12:52 am

2 Replies

414 Views

Last post by breakwave922
Mon Sep 14, 2020 2:20 pm
Multiple stimulation of POINT_PROCESS per run

Last post by ted « Tue Sep 08, 2020 5:07 pm
Replies: 3
by parent41 » Thu Aug 06, 2020 11:12 am

3 Replies

646 Views

Last post by ted
Tue Sep 08, 2020 5:07 pm
Ephaptic coupling of Axons

Last post by ted « Mon Aug 03, 2020 11:32 pm
Replies: 1
by subash774 » Mon Aug 03, 2020 4:50 pm

1 Replies

458 Views

Last post by ted
Mon Aug 03, 2020 11:32 pm
Is it possible to track "value explosions" and out of range errors

Last post by hines « Tue Jul 28, 2020 4:47 pm
Replies: 2
by duytanph » Thu Jul 23, 2020 9:43 pm

2 Replies

536 Views

Last post by hines
Tue Jul 28, 2020 4:47 pm
Modelling a chain of HH cell with myelinated axon

Last post by subash774 « Tue Jul 28, 2020 9:02 am
Replies: 16
by subash774 » Mon Jul 20, 2020 7:37 am
1

2
16 Replies

1846 Views

Last post by subash774
Tue Jul 28, 2020 9:02 am
color or color_list procedures in PlotShape

Last post by roybens « Tue Jul 21, 2020 12:40 pm
Replies: 5
by roybens » Mon Jul 06, 2020 4:58 pm

5 Replies

816 Views

Last post by roybens
Tue Jul 21, 2020 12:40 pm
Does the usage of the Shape may affect mV readouts?

Last post by ziemek « Sat Jul 18, 2020 3:34 pm
Replies: 5
by ziemek » Mon Jun 29, 2020 6:29 am

5 Replies

861 Views

Last post by ziemek
Sat Jul 18, 2020 3:34 pm
Best practice to run hundreds of simulations / remove all objects between runs

Last post by ziemek « Sat Jul 11, 2020 6:13 am
Replies: 6
by ziemek » Thu Jul 09, 2020 9:16 am

6 Replies

1005 Views

Last post by ziemek
Sat Jul 11, 2020 6:13 am
Error recording channel current by passing string to Vector.record

Last post by ramcdougal « Mon Jun 29, 2020 12:38 pm
Replies: 3
by Darshan » Sat Jun 20, 2020 1:42 am

3 Replies

676 Views

Last post by ramcdougal
Mon Jun 29, 2020 12:38 pm
ampanmda mod file working with AlphaSynapse

Last post by ted « Tue Jun 23, 2020 4:29 pm
Replies: 7
by parent41 » Fri Jun 05, 2020 10:53 am

7 Replies

1684 Views

Last post by ted
Tue Jun 23, 2020 4:29 pm
range morphology and mechanism syntax for sections in python

Last post by ted « Sat May 30, 2020 2:02 am
Replies: 9
by nicholasmg » Mon May 11, 2020 11:26 pm

9 Replies

2438 Views

Last post by ted
Sat May 30, 2020 2:02 am
using compiled mod files from python script in a different direcory

Last post by nicholasmg « Wed Apr 29, 2020 6:09 pm
Replies: 2
by nicholasmg » Wed Apr 29, 2020 5:43 pm

2 Replies

2365 Views

Last post by nicholasmg
Wed Apr 29, 2020 6:09 pm
Record from multiple neurons

Last post by ted « Thu Apr 09, 2020 12:05 pm
Replies: 2
by Mrohani57 » Wed Apr 08, 2020 6:47 pm

2 Replies

930 Views

Last post by ted
Thu Apr 09, 2020 12:05 pm
Copy a nrn object in Python?

Last post by ramcdougal « Sat Apr 04, 2020 4:55 pm
Replies: 5
by igor » Wed Apr 01, 2020 1:02 pm

5 Replies

1369 Views

Last post by ramcdougal
Sat Apr 04, 2020 4:55 pm
inserting synaptic mechanisms from mod file

Last post by ted « Fri Apr 03, 2020 1:37 pm
Replies: 1
by Natali83 » Wed Apr 01, 2020 1:44 pm

1 Replies

925 Views

Last post by ted
Fri Apr 03, 2020 1:37 pm
NetStim and NetCon

Last post by ramcdougal « Thu Apr 02, 2020 9:47 am
Replies: 3
by anandhupresannan » Mon Mar 09, 2020 1:15 am

3 Replies

1164 Views

Last post by ramcdougal
Thu Apr 02, 2020 9:47 am
Using vectors as arguments for pt3dadd

Last post by neuromau « Tue Mar 03, 2020 9:06 pm
Replies: 2
by neuromau » Mon Mar 02, 2020 3:46 pm

2 Replies

848 Views

Last post by neuromau
Tue Mar 03, 2020 9:06 pm
Vector Values

Last post by ramcdougal « Wed Feb 26, 2020 9:46 am
Replies: 2
by Jahanzaib » Tue Feb 25, 2020 2:50 pm

2 Replies

864 Views

Last post by ramcdougal
Wed Feb 26, 2020 9:46 am
For loop over section's segments in Python and HOC returns different values

Last post by ramcdougal « Fri Jan 31, 2020 5:15 pm
Replies: 4
by ziemek » Fri Jan 31, 2020 5:14 am

4 Replies

1298 Views

Last post by ramcdougal
Fri Jan 31, 2020 5:15 pm
Rset or reboot neuron without exist in python

Last post by ramcdougal « Wed Jan 29, 2020 8:07 pm
Replies: 6
by anandhupresannan » Wed Feb 27, 2019 1:14 am

6 Replies

2249 Views

Last post by ramcdougal
Wed Jan 29, 2020 8:07 pm
Dynamically accessing vectors in python (_ref_x)

Last post by cstricker « Sun Jan 19, 2020 5:27 pm
Replies: 5
by cstricker » Thu Jan 09, 2020 2:10 am

5 Replies

1318 Views

Last post by cstricker
Sun Jan 19, 2020 5:27 pm
different section names, morphology - h.Section

Last post by bremen « Thu Jan 16, 2020 4:10 pm
Replies: 2
by bremen » Fri Jan 10, 2020 4:53 pm

2 Replies

880 Views

Last post by bremen
Thu Jan 16, 2020 4:10 pm
Finding middle of a section

Last post by ted « Mon Jan 13, 2020 1:00 pm
Replies: 4
by ssrihari » Sat Jan 11, 2020 5:50 pm

4 Replies

1121 Views

Last post by ted
Mon Jan 13, 2020 1:00 pm
Converting HOC extracellular to Python

Last post by ssrihari « Sat Jan 11, 2020 7:36 pm
Replies: 3
by ssrihari » Tue Dec 31, 2019 5:42 pm

3 Replies

1089 Views

Last post by ssrihari
Sat Jan 11, 2020 7:36 pm
Print Issue after using .connect()

Last post by ted « Thu Jan 02, 2020 10:05 pm
Replies: 1
by ssrihari » Tue Dec 31, 2019 4:19 pm

1 Replies

811 Views

Last post by ted
Thu Jan 02, 2020 10:05 pm
Associative arrays in HOC

Last post by ted « Wed Jan 01, 2020 7:48 pm
Replies: 5
by vogdb » Fri Dec 13, 2019 5:36 pm

5 Replies

1323 Views

Last post by ted
Wed Jan 01, 2020 7:48 pm
Video Tutorial on how to compile .mod file and incorporate it with Python for simulation

Last post by ted « Tue Dec 17, 2019 1:18 pm
Replies: 1
by shhschen » Mon Dec 16, 2019 9:34 pm

1 Replies

1003 Views

Last post by ted
Tue Dec 17, 2019 1:18 pm
How to access HOC arrays from Python?

Last post by ziemek « Tue Dec 10, 2019 2:10 pm
Replies: 2
by ziemek » Wed Dec 04, 2019 8:00 am

2 Replies

1940 Views

Last post by ziemek
Tue Dec 10, 2019 2:10 pm

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