NEURON + Python

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Use NEURON's native GUI tools with Python!

Last post by ted « Fri Sep 27, 2019 11:23 am
Replies: 2
by ted » Tue Aug 08, 2017 2:48 pm

2 Replies

15218 Views

Last post by ted
Fri Sep 27, 2019 11:23 am
More NEURON + Python documentation

Last post by ramcdougal « Wed Oct 24, 2018 7:07 am
Replies: 6
by ted » Mon Mar 24, 2008 10:17 am

6 Replies

27900 Views

Last post by ramcdougal
Wed Oct 24, 2018 7:07 am
More NEURON + Python resources

Last post by wjbeaver « Wed Dec 22, 2010 4:38 pm
Replies: 4
by mctavish » Wed Dec 01, 2010 3:13 pm

4 Replies

18649 Views

Last post by wjbeaver
Wed Dec 22, 2010 4:38 pm
POINTER is not thread safe

Last post by ted « Thu Aug 11, 2022 9:58 pm
Replies: 6
by alexandrapierri » Fri Aug 05, 2022 10:27 pm

6 Replies

163 Views

Last post by ted
Thu Aug 11, 2022 9:58 pm
Accessing Pointers instantiated through Python

Last post by oitani « Wed Aug 10, 2022 1:12 pm

by oitani » Wed Aug 10, 2022 1:12 pm

0 Replies

23 Views

Last post by oitani
Wed Aug 10, 2022 1:12 pm
mechanisms written in python?

Last post by ted « Wed Aug 03, 2022 2:34 pm
Replies: 5
by alexandrapierri » Mon Aug 01, 2022 9:24 pm

5 Replies

104 Views

Last post by ted
Wed Aug 03, 2022 2:34 pm
Recording synaptic currents

Last post by alexandrapierri « Wed Jul 27, 2022 6:16 pm
Replies: 4
by alexandrapierri » Mon Jul 25, 2022 1:34 pm

4 Replies

151 Views

Last post by alexandrapierri
Wed Jul 27, 2022 6:16 pm
Can the simulation results of Python and HOC be different?

Last post by virtualkss « Wed Jul 20, 2022 10:05 pm
Replies: 5
by virtualkss » Mon Jul 18, 2022 5:56 am

5 Replies

130 Views

Last post by virtualkss
Wed Jul 20, 2022 10:05 pm
Trouble using play method on Python with complex cells

Last post by gabrielggn « Thu Jul 07, 2022 4:00 am

by gabrielggn » Thu Jul 07, 2022 4:00 am

0 Replies

117 Views

Last post by gabrielggn
Thu Jul 07, 2022 4:00 am
Minor typo in tutorial

Last post by ramcdougal « Mon Jun 13, 2022 3:56 pm
Replies: 1
by fietkiewicz » Mon Jun 13, 2022 3:45 pm

1 Replies

128 Views

Last post by ramcdougal
Mon Jun 13, 2022 3:56 pm
Mechanisms ignored when attempting to initialize events

Last post by pacificmadrone « Wed Jun 01, 2022 3:26 pm
Replies: 2
by pacificmadrone » Thu May 12, 2022 2:55 pm

2 Replies

537 Views

Last post by pacificmadrone
Wed Jun 01, 2022 3:26 pm
Uploading .swc file through .hoc

Last post by ted « Mon Apr 25, 2022 11:46 am
Replies: 3
by neuron121! » Sat Apr 02, 2022 2:13 pm

3 Replies

320 Views

Last post by ted
Mon Apr 25, 2022 11:46 am
Problem plotting PlotShape

Last post by ted « Tue Mar 22, 2022 12:02 pm
Replies: 7
by fvarkevisser » Thu Sep 23, 2021 10:53 am

7 Replies

892 Views

Last post by ted
Tue Mar 22, 2022 12:02 pm
IClamp and ImpedanceRatio in python

Last post by rmaina « Tue Feb 15, 2022 2:12 pm
Replies: 2
by rmaina » Fri Feb 11, 2022 12:46 pm

2 Replies

374 Views

Last post by rmaina
Tue Feb 15, 2022 2:12 pm
Shape plot update from Python

Last post by ted « Tue Feb 01, 2022 3:15 pm
Replies: 4
by ziemek » Mon Dec 02, 2019 1:22 pm

4 Replies

1814 Views

Last post by ted
Tue Feb 01, 2022 3:15 pm
Recording multiple netcon's weight with one synapse mechanism

Last post by ted « Fri Dec 31, 2021 11:11 am
Replies: 3
by dragon88hj » Thu Dec 30, 2021 1:58 am

3 Replies

341 Views

Last post by ted
Fri Dec 31, 2021 11:11 am
solving differential equation describing Vm

Last post by ted « Sat Dec 04, 2021 4:57 pm
Replies: 1
by finesniper » Fri Dec 03, 2021 5:07 pm

1 Replies

3405 Views

Last post by ted
Sat Dec 04, 2021 4:57 pm
hh.mod + Python + membrane potential at several points of the soma

Last post by ted « Tue Nov 16, 2021 12:01 pm
Replies: 5
by smetens » Wed Jun 09, 2021 11:09 am

5 Replies

1576 Views

Last post by ted
Tue Nov 16, 2021 12:01 pm
Time dependent NetCon weight

Last post by ted « Thu Nov 04, 2021 12:10 pm
Replies: 1
by ido4848 » Thu Nov 04, 2021 3:35 am

1 Replies

397 Views

Last post by ted
Thu Nov 04, 2021 12:10 pm
added a synapse with python

Last post by ted « Wed Nov 03, 2021 2:04 pm
Replies: 1
by OronKotler » Sun Oct 31, 2021 4:08 am

1 Replies

406 Views

Last post by ted
Wed Nov 03, 2021 2:04 pm
How to set spike detection threshold for pc.spike_record

Last post by Johannes « Thu Oct 14, 2021 9:40 am
Replies: 2
by Johannes » Wed Oct 13, 2021 6:03 am

2 Replies

3344 Views

Last post by Johannes
Thu Oct 14, 2021 9:40 am
Error running NEURON with embedded Python

Last post by ted « Wed Oct 13, 2021 12:37 pm
Replies: 3
by ttarnaud » Fri Dec 07, 2018 10:56 am

3 Replies

3910 Views

Last post by ted
Wed Oct 13, 2021 12:37 pm
problem instantiating a hoc template from python

Last post by ted « Sun Sep 19, 2021 1:25 am
Replies: 3
by alexandrapierri » Fri Sep 17, 2021 8:46 pm

3 Replies

635 Views

Last post by ted
Sun Sep 19, 2021 1:25 am
undefined symbol: nrnpython_start

Last post by Feanor « Fri Sep 17, 2021 10:57 am
Replies: 8
by Feanor » Mon Sep 13, 2021 4:25 pm

8 Replies

1075 Views

Last post by Feanor
Fri Sep 17, 2021 10:57 am
Import3d tool via Jupyter

Last post by landoskape « Fri Aug 27, 2021 6:49 pm
Replies: 2
by landoskape » Thu Aug 12, 2021 11:37 am

2 Replies

608 Views

Last post by landoskape
Fri Aug 27, 2021 6:49 pm
Preproducing updating PlotShape() figures in

Last post by ramcdougal « Wed Jul 28, 2021 6:11 am
Replies: 1
by RBJ » Wed Jul 28, 2021 5:54 am

1 Replies

917 Views

Last post by ramcdougal
Wed Jul 28, 2021 6:11 am
Exporting .ses from Linear Circuit Builder

Last post by ted « Thu Jul 22, 2021 1:41 pm
Replies: 1
by ckelley » Mon Jul 19, 2021 1:02 pm

1 Replies

690 Views

Last post by ted
Thu Jul 22, 2021 1:41 pm
Using h.APCount with the extracellular mechanism

Last post by ted « Sat Jun 26, 2021 12:13 am
Replies: 1
by andrewq » Fri Jun 25, 2021 4:27 pm

1 Replies

524 Views

Last post by ted
Sat Jun 26, 2021 12:13 am
Why does this Python Hoc Cell Instantiation from Hoc with getattr() work after adding (morpho_path) behind.

Last post by watersun « Sun Jun 20, 2021 12:00 pm

by watersun » Sun Jun 20, 2021 12:00 pm

0 Replies

696 Views

Last post by watersun
Sun Jun 20, 2021 12:00 pm
silencing netstim during simulation.

Last post by alexandrapierri « Tue May 11, 2021 9:43 am
Replies: 2
by alexandrapierri » Mon May 10, 2021 9:51 pm

2 Replies

777 Views

Last post by alexandrapierri
Tue May 11, 2021 9:43 am
Correcting poor code design

Last post by ted « Mon May 03, 2021 4:05 pm
Replies: 3
by aliaped » Mon May 03, 2021 10:39 am

3 Replies

1037 Views

Last post by ted
Mon May 03, 2021 4:05 pm
Assigning values to a mechanism over all sections in anatomically detailed model

Last post by aliaped « Mon Apr 26, 2021 10:25 am
Replies: 3
by aliaped » Mon Apr 12, 2021 10:30 am

3 Replies

928 Views

Last post by aliaped
Mon Apr 26, 2021 10:25 am
Simulation Setup when using a List of NetCons, VecStims and Exp2Syn for multiple spike train stimulation

Last post by ted « Thu Apr 15, 2021 5:41 pm
Replies: 3
by Liz_Stan_88 » Wed Apr 14, 2021 4:03 pm

3 Replies

1093 Views

Last post by ted
Thu Apr 15, 2021 5:41 pm
Myelin modeling

Last post by ted « Wed Apr 14, 2021 11:54 am
Replies: 3
by OronKotler » Thu Mar 25, 2021 3:13 am

3 Replies

1053 Views

Last post by ted
Wed Apr 14, 2021 11:54 am
Impulse Response for all locations

Last post by ted « Tue Apr 13, 2021 11:45 am
Replies: 1
by tmoldwin » Tue Apr 13, 2021 7:35 am

1 Replies

706 Views

Last post by ted
Tue Apr 13, 2021 11:45 am
initbatser.py

Last post by ted « Wed Mar 24, 2021 10:26 am
Replies: 3
by margo.k3008 » Tue Mar 23, 2021 1:44 pm

3 Replies

736 Views

Last post by ted
Wed Mar 24, 2021 10:26 am
Kernel dies in Jupyter notebook when attempting to import NEURON

Last post by ted « Thu Mar 18, 2021 12:06 pm
Replies: 3
by oitani » Mon Mar 15, 2021 5:57 pm

3 Replies

3044 Views

Last post by ted
Thu Mar 18, 2021 12:06 pm
hoc file is not a template

Last post by ted « Tue Mar 02, 2021 12:31 pm
Replies: 6
by alexandrapierri » Thu Feb 25, 2021 11:45 am

6 Replies

1228 Views

Last post by ted
Tue Mar 02, 2021 12:31 pm
Update to __init__.py?

Last post by ramcdougal « Mon Mar 01, 2021 2:15 pm
Replies: 1
by cvaaga » Mon Mar 01, 2021 1:55 pm

1 Replies

642 Views

Last post by ramcdougal
Mon Mar 01, 2021 2:15 pm
Save data from a loop in data acquired from neuron

Last post by ted « Wed Feb 24, 2021 10:50 am
Replies: 1
by OronKotler » Wed Feb 24, 2021 8:51 am

1 Replies

633 Views

Last post by ted
Wed Feb 24, 2021 10:50 am
Mechanisms in nrnmech.dll do not seem to be loading in python script

Last post by ted « Wed Feb 10, 2021 9:59 am
Replies: 5
by Liz_Stan_88 » Tue Feb 09, 2021 11:22 am

5 Replies

1563 Views

Last post by ted
Wed Feb 10, 2021 9:59 am
Record and fadvance instead of run

Last post by fkolbl « Thu Dec 31, 2020 11:23 am
Replies: 2
by fkolbl » Wed Dec 30, 2020 2:41 pm

2 Replies

1068 Views

Last post by fkolbl
Thu Dec 31, 2020 11:23 am
Recording voltage across elements and using external stim Linear Circuit Builder

Last post by ted « Mon Nov 23, 2020 5:39 pm
Replies: 1
by ckelley » Fri Nov 20, 2020 3:28 pm

1 Replies

929 Views

Last post by ted
Mon Nov 23, 2020 5:39 pm
Modelling of subcellular signalling

Last post by ted « Wed Nov 18, 2020 10:42 pm
Replies: 1
by jofrony » Wed Nov 18, 2020 1:25 pm

1 Replies

765 Views

Last post by ted
Wed Nov 18, 2020 10:42 pm
External Stimuli not working

Last post by ted « Fri Oct 02, 2020 11:25 am
Replies: 1
by gladonias » Mon Aug 17, 2020 6:38 am

1 Replies

1622 Views

Last post by ted
Fri Oct 02, 2020 11:25 am
implement Randles circuit in NEURON

Last post by breakwave922 « Wed Sep 30, 2020 2:36 pm
Replies: 3
by breakwave922 » Tue Sep 29, 2020 6:52 pm

3 Replies

1239 Views

Last post by breakwave922
Wed Sep 30, 2020 2:36 pm
cell counting on an image with python

Last post by gladonias « Thu Sep 17, 2020 11:34 am
Replies: 4
by fpointeau » Mon Apr 13, 2020 11:54 am

4 Replies

3352 Views

Last post by gladonias
Thu Sep 17, 2020 11:34 am
Connect multiple cells using connection probabilities

Last post by gladonias « Thu Sep 17, 2020 11:26 am
Replies: 4
by ekkya » Sat Mar 03, 2018 10:15 am

4 Replies

5398 Views

Last post by gladonias
Thu Sep 17, 2020 11:26 am
Frequency dependent activation of g protein models

Last post by ted « Mon Sep 14, 2020 3:17 pm
Replies: 2
by jofrony » Tue Nov 12, 2019 6:20 am

2 Replies

4759 Views

Last post by ted
Mon Sep 14, 2020 3:17 pm
injecting continuous normally distributed noise in python

Last post by ted « Mon Sep 14, 2020 3:10 pm
Replies: 2
by thiank » Sun Aug 25, 2019 10:57 pm

2 Replies

2160 Views

Last post by ted
Mon Sep 14, 2020 3:10 pm

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