Adding new mechanisms and functions to NEURON

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"My mechanisms don't load!"

Last post by mildan « Wed Jun 20, 2018 4:38 am
Replies: 21
by ted » Wed Aug 11, 2010 10:30 am
1

2
21 Replies

39770 Views

Last post by mildan
Wed Jun 20, 2018 4:38 am
How to implement temperature dependent rates

Last post by bosleyjr « Tue Jun 18, 2013 4:59 pm
Replies: 3
by ted » Wed Mar 15, 2006 12:15 pm

3 Replies

18000 Views

Last post by bosleyjr
Tue Jun 18, 2013 4:59 pm
Block sequence in NMODL

Last post by ted « Thu Aug 31, 2006 11:05 am

by ted » Thu Aug 31, 2006 11:05 am

0 Replies

16519 Views

Last post by ted
Thu Aug 31, 2006 11:05 am
Adding new mechanisms to NEURON

Last post by ted « Thu Aug 03, 2006 5:11 pm
Replies: 1
by ted » Thu Dec 15, 2005 4:35 pm

1 Replies

20942 Views

Last post by ted
Thu Aug 03, 2006 5:11 pm
Where to learn about mod files and NMODL

Last post by ted « Thu May 19, 2005 10:11 pm

by ted » Thu May 19, 2005 10:11 pm

0 Replies

30093 Views

Last post by ted
Thu May 19, 2005 10:11 pm
Modifying cell capacitance (cm) via a mod file (also cai)

Last post by roybens « Tue Oct 26, 2021 12:56 pm
Replies: 2
by roybens » Mon Oct 25, 2021 3:34 pm

2 Replies

31 Views

Last post by roybens
Tue Oct 26, 2021 12:56 pm
undersampling curves

Last post by ted « Tue Oct 19, 2021 12:43 pm
Replies: 9
by thitsa » Thu Oct 07, 2021 7:39 am

9 Replies

220 Views

Last post by ted
Tue Oct 19, 2021 12:43 pm
Strangeness when recording state variable

Last post by NickHananeia « Mon Jul 12, 2021 11:36 am
Replies: 6
by NickHananeia » Thu Jul 08, 2021 8:07 am

6 Replies

404 Views

Last post by NickHananeia
Mon Jul 12, 2021 11:36 am
Changing range parameters

Last post by renewilbers « Sun Jun 20, 2021 4:59 pm
Replies: 1
by renewilbers » Sat Jun 19, 2021 10:16 am

1 Replies

261 Views

Last post by renewilbers
Sun Jun 20, 2021 4:59 pm
Questions about the extracellular mechanism and the syntax of NMODL

Last post by ted « Mon May 10, 2021 3:03 pm
Replies: 4
by Christine Chung » Mon May 03, 2021 5:43 am

4 Replies

567 Views

Last post by ted
Mon May 10, 2021 3:03 pm
mod file CVODE compatibility

Last post by Darshan « Fri May 07, 2021 4:17 pm
Replies: 12
by Brad » Wed Jun 15, 2005 12:13 pm

12 Replies

8582 Views

Last post by Darshan
Fri May 07, 2021 4:17 pm
calling a function from NMODL

Last post by hines « Tue Mar 23, 2021 7:47 pm
Replies: 10
by Nooshin » Sat Mar 13, 2021 7:32 pm

10 Replies

959 Views

Last post by hines
Tue Mar 23, 2021 7:47 pm
netstim and randomness

Last post by ted « Tue Mar 09, 2021 4:14 pm
Replies: 1
by fabien tell » Sun Mar 07, 2021 12:49 pm

1 Replies

378 Views

Last post by ted
Tue Mar 09, 2021 4:14 pm
How to find EXp2Syn

Last post by fabien tell « Mon Feb 22, 2021 1:04 pm
Replies: 2
by fabien tell » Sun Feb 21, 2021 7:58 am

2 Replies

387 Views

Last post by fabien tell
Mon Feb 22, 2021 1:04 pm
A pump MOD file and no concentration inside

Last post by ted « Mon Feb 01, 2021 1:53 pm
Replies: 3
by bremen » Sat Jan 30, 2021 3:00 am

3 Replies

468 Views

Last post by ted
Mon Feb 01, 2021 1:53 pm
Defining a POINTER to be a list

Last post by itaru « Tue Aug 11, 2020 8:17 pm
Replies: 16
by dabliss » Tue Mar 17, 2015 9:52 pm
1

2
16 Replies

8710 Views

Last post by itaru
Tue Aug 11, 2020 8:17 pm
Arbitrary waveform

Last post by ted « Mon Jun 29, 2020 12:57 pm
Replies: 1
by Andela » Mon Jun 29, 2020 2:12 am

1 Replies

781 Views

Last post by ted
Mon Jun 29, 2020 12:57 pm
Maximum frequency of current stimulation

Last post by ted « Mon Jun 22, 2020 10:45 am
Replies: 3
by jaehoonlee13 » Thu Jun 18, 2020 4:56 am

3 Replies

809 Views

Last post by ted
Mon Jun 22, 2020 10:45 am
Syncronized concentrations in and out the membrane

Last post by bremen « Fri Mar 27, 2020 3:37 pm
Replies: 1
by bremen » Thu Mar 26, 2020 11:11 am

1 Replies

1444 Views

Last post by bremen
Fri Mar 27, 2020 3:37 pm
Interfacing NEURON with other software on runtime

Last post by Ricardo_Molinari « Wed Jan 29, 2020 4:17 pm
Replies: 4
by Ricardo_Molinari » Tue Jan 28, 2020 5:32 pm

4 Replies

1235 Views

Last post by Ricardo_Molinari
Wed Jan 29, 2020 4:17 pm
Modeling leaky integrate-and-fire neuron including Hodgkin–Huxley-like currents

Last post by ted « Tue Jan 28, 2020 12:35 pm
Replies: 1
by harrisonZ » Mon Jan 27, 2020 4:26 pm

1 Replies

1035 Views

Last post by ted
Tue Jan 28, 2020 12:35 pm
Adding cilia with an added mechanism to a dendrite

Last post by bdut « Thu Jan 16, 2020 1:40 am
Replies: 2
by bdut » Mon Jan 06, 2020 3:17 am

2 Replies

2581 Views

Last post by bdut
Thu Jan 16, 2020 1:40 am
Accessing state variables of one mechanisn in another mechanism

Last post by bdut « Fri Jan 03, 2020 4:52 am
Replies: 4
by bdut » Sun Dec 01, 2019 11:35 pm

4 Replies

1330 Views

Last post by bdut
Fri Jan 03, 2020 4:52 am
using diam and L params inside MODL file

Last post by adamjhn « Mon Dec 02, 2019 3:12 pm
Replies: 5
by ziemek » Mon Nov 25, 2019 11:16 am

5 Replies

1799 Views

Last post by adamjhn
Mon Dec 02, 2019 3:12 pm
where to declare cai and cao ?

Last post by ted « Sun Dec 01, 2019 11:37 am
Replies: 1
by rth » Sun Nov 24, 2019 10:54 pm

1 Replies

977 Views

Last post by ted
Sun Dec 01, 2019 11:37 am
NMODL: COMPARTMENT statement in the KINETIC section

Last post by ziemek « Mon Nov 25, 2019 6:16 am
Replies: 2
by ziemek » Thu Nov 21, 2019 7:47 am

2 Replies

977 Views

Last post by ziemek
Mon Nov 25, 2019 6:16 am
Failure rates in synapse model

Last post by jofrony « Mon Nov 25, 2019 5:05 am

by jofrony » Mon Nov 25, 2019 5:05 am

0 Replies

1179 Views

Last post by jofrony
Mon Nov 25, 2019 5:05 am
Calcium diffusion and shells

Last post by ted « Wed Nov 20, 2019 10:36 am
Replies: 5
by ziemek » Thu Nov 14, 2019 7:41 am

5 Replies

1421 Views

Last post by ted
Wed Nov 20, 2019 10:36 am
adrunge not thread safe

Last post by hines « Wed Nov 06, 2019 6:34 am
Replies: 2
by wwlytton » Tue Nov 05, 2019 6:34 pm

2 Replies

1091 Views

Last post by hines
Wed Nov 06, 2019 6:34 am
Adding delay to a graded synapse model

Last post by subhacom « Mon Oct 07, 2019 1:36 pm
Replies: 2
by subhacom » Mon Oct 07, 2019 11:04 am

2 Replies

1305 Views

Last post by subhacom
Mon Oct 07, 2019 1:36 pm
Solving 8 interdependent differential equations

Last post by bdut « Fri Sep 20, 2019 11:36 am
Replies: 6
by bdut » Thu Sep 19, 2019 12:53 am

6 Replies

1706 Views

Last post by bdut
Fri Sep 20, 2019 11:36 am
mknrndll fils with undefined reference

Last post by JimH « Sat Sep 07, 2019 1:20 pm
Replies: 2
by JimH » Thu Sep 05, 2019 2:50 pm

2 Replies

1685 Views

Last post by JimH
Sat Sep 07, 2019 1:20 pm
Differences between NONSPECIFIC_CURRENT & ELECTRODE_CURRENT

Last post by Kvogt « Wed Jul 17, 2019 6:28 pm
Replies: 9
by shailesh » Sun Aug 11, 2013 4:09 am

9 Replies

6990 Views

Last post by Kvogt
Wed Jul 17, 2019 6:28 pm
Extending Single-Compartment to Multi-Compartment model

Last post by Kvogt « Wed Jul 17, 2019 6:27 pm
Replies: 4
by Kvogt » Wed Jun 26, 2019 12:15 pm

4 Replies

2704 Views

Last post by Kvogt
Wed Jul 17, 2019 6:27 pm
How does a section recognize a mechanism's current?

Last post by duytanph « Wed Jul 17, 2019 2:51 pm
Replies: 2
by duytanph » Fri Jul 12, 2019 5:00 pm

2 Replies

1597 Views

Last post by duytanph
Wed Jul 17, 2019 2:51 pm
Membrane Potential Equation

Last post by Kvogt « Wed Jun 19, 2019 5:43 pm
Replies: 2
by Kvogt » Thu Jun 13, 2019 2:00 pm

2 Replies

1469 Views

Last post by Kvogt
Wed Jun 19, 2019 5:43 pm
Loading New Artifical Cell into NEURON

Last post by ted « Mon Jun 17, 2019 10:46 am
Replies: 5
by tmazing » Fri Jun 14, 2019 1:41 pm

5 Replies

2004 Views

Last post by ted
Mon Jun 17, 2019 10:46 am
Using ion_style() to treat eca as a fixed parameter and cai as a dynamical variable

Last post by pascal « Thu May 30, 2019 6:09 pm
Replies: 2
by pascal » Wed May 29, 2019 2:32 pm

2 Replies

1576 Views

Last post by pascal
Thu May 30, 2019 6:09 pm
Where to find squid.hoc associated with hh.mod

Last post by pascal « Fri May 24, 2019 12:47 am
Replies: 8
by pascal » Tue Oct 09, 2018 12:13 pm

8 Replies

6590 Views

Last post by pascal
Fri May 24, 2019 12:47 am
Stochastic gating as a function of external variable (light, membrane tension)

Last post by aNNe « Wed May 22, 2019 8:41 pm
Replies: 3
by aNNe » Tue May 14, 2019 6:30 am

3 Replies

1869 Views

Last post by aNNe
Wed May 22, 2019 8:41 pm
NMODL Compile Error: Assertion failed!

Last post by Darshan « Tue Mar 12, 2019 4:11 pm
Replies: 10
by Darshan » Sat Mar 09, 2019 1:38 am

10 Replies

4685 Views

Last post by Darshan
Tue Mar 12, 2019 4:11 pm
adding noise to input

Last post by menica « Tue Mar 12, 2019 9:59 am
Replies: 1
by menica » Fri Mar 08, 2019 8:43 am

1 Replies

1433 Views

Last post by menica
Tue Mar 12, 2019 9:59 am
How to quantify spike number using additional criteria such as amplitude

Last post by ted « Thu Feb 28, 2019 10:49 am
Replies: 1
by zylittlep » Mon Feb 25, 2019 4:41 pm

1 Replies

1326 Views

Last post by ted
Thu Feb 28, 2019 10:49 am
Adding white nose to current injection

Last post by menica « Tue Feb 26, 2019 9:18 am
Replies: 10
by Skyfire79 » Mon Sep 27, 2010 6:21 pm

10 Replies

11391 Views

Last post by menica
Tue Feb 26, 2019 9:18 am
How to change parameter used in NMODL for channel kinetics in hoc

Last post by zylittlep « Mon Feb 25, 2019 4:33 pm
Replies: 11
by zylittlep » Tue Feb 19, 2019 5:22 pm

11 Replies

4134 Views

Last post by zylittlep
Mon Feb 25, 2019 4:33 pm
KINETIC block for enzymatic reaction

Last post by hines « Tue Jan 22, 2019 5:30 pm
Replies: 1
by simonvhardy » Mon Jan 21, 2019 5:18 pm

1 Replies

3074 Views

Last post by hines
Tue Jan 22, 2019 5:30 pm
Ineffective simulation with small duration current injection

Last post by ted « Fri Aug 24, 2018 3:07 pm
Replies: 2
by doctorxue » Fri Aug 24, 2018 12:03 pm

2 Replies

2049 Views

Last post by ted
Fri Aug 24, 2018 3:07 pm
HOC kernel for Jupyter

Last post by bll5z6 « Fri Aug 17, 2018 11:17 am
Replies: 3
by bll5z6 » Thu May 03, 2018 3:03 pm

3 Replies

3128 Views

Last post by bll5z6
Fri Aug 17, 2018 11:17 am
Computational Optogenetics: modelling ChR2 in NMODL

Last post by ted « Mon Aug 13, 2018 10:14 pm
Replies: 2
by mgiugliano » Thu Aug 09, 2018 6:45 am

2 Replies

2863 Views

Last post by ted
Mon Aug 13, 2018 10:14 pm
A question about USEION statement

Last post by ramcdougal « Mon Aug 13, 2018 1:06 pm
Replies: 1
by doctorxue » Mon Aug 13, 2018 11:42 am

1 Replies

1825 Views

Last post by ramcdougal
Mon Aug 13, 2018 1:06 pm

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