www.neuron.yale.edu

I've run the address sanitizer several times and upon ^C have always ended up at nrn-enable-sanitizer --preload python3 -i test.py ... Adding flux to exc. synapse 500/500 in spine 2/2: prend seg = spine[1](0.5), postnd seg = dend[65](0.5) Starting simulation ^CAddressSanitizer:DEADLYSIGNAL =========...

Perhaps this is now somewhat stale. But if your windows11 computer is available, I would be happy to have a zoom meeting where you could share your screen and we might work through the issue. If you wish to proceed, contact me at michael dot hines at yale dot edu. The first thing to diagnose is the ...

I'm sorry to say that in NEURON version 8 and before , the interpreters do not store the information used to determine the address. And in the internal implementation the only way to know what a pointer was pointing to was to search all internal data structures. This, of course, made it very inconve...

Gives me a segfault for NEURON version 8.1.0 but not for 8.2.2 or current master.

I also built the master using the address sanitizer and there were no substantive complaints (only some memory leaks), so there is a possibility that the bug was fixed after 8.1.0.

scoplib_ansi.h was removed from the system back in Jan 2022. I expect you need a clean folder where you type nrnivmodl. Just remove all the *.o, *.c, *.cpp, *.dll files from your folder. (and remove the x86_64 folder if it exists in your folder)

successful compilation

No warnings?
I would prefer accurate use of types. I.e. instead of and instead of (in that particular case)

try replacing the three lines #define VOIDCAST void** vp = (void**)(&(_p_ptr)) extern void * nrnran123_newstream(int,int); extern void nrnran123_deletestream(void *); with the single line #define VOIDCAST nrnran123_State** vp = (nrnran123_State**)(&(_p_ptr)) and also *vp = nrnran123_newstrea...

Perhaps this is beside the point since the configuration mentioned nothing about what in cmake is -DNRN_ENABLE_PYTHON_DYNAMIC=ON I mention it because usually it is in that context that multiple python installations allow the wrong choice at runtime for libpython..so If runtime dynamic loading is NOT...

Multisplit will not provide a complete parallel solution as it is limited to voltage as the coupling variable between compartments. However it does suffice for the stiff (very small time constants can be a source of numerical instability and voltage coupling between small compartments is very large)...

I'm afraid the model that coelesced in my mind after reading your post is unlikely to be the same as your existing (working serial?) model. I'm imagining a few states per compartment of a cell that are coupled to the corresponding states of adjacent compartments of the same cell via fluxes that are ...

parcom.hoc is only for load balancing an already existing network model (or large cell). To make your 4 line fragment work , the 4 lines must be moved after cell = Section() However, I believe your purpose can be better achieved with pc = h.ParallelContext() pc.nthread(16) # assuming you have 16 cor...

The problem is that nrnpyenv.sh cannot figure out the location of the shared python library. (I can't remember how the neuron wheel was configured but assume it was with NRN_ENABLE_DYNAMIC_PYTHON=ON. Please check with nrniv nrnversion(6) ) If that really is the case, then a correct value for the NRN...

If you are happy with launching python instead of nrniv, then fine and we can consider the issue closed. If you do wish to resolve the nrniv -python issue then I'm happy to help lead you through the diagnosis and hopefully a solution. To start, I'll need to know the complete output of the above comm...

Hmmm. Maybe anaconda does now have an M1 version.
https://www.anaconda.com/blog/new-relea ... porting-m1
But it is surprising that the filename of the download is Anaconda3-2022.05-MacOSX-x86_64.pkg. so I guess I'm skeptical that that is a universal2 installer.

Please see https://nrn.readthedocs.io/en/latest/install/install_instructions.html#mac-os with special attention to the information that begins Universal2 installers generally “just work” on either an x86_64 or arm64 architecture. Your problem is that nrniv is a universal program that starts up by de...