Search found 13 matches
- Wed Oct 21, 2020 8:32 pm
- Forum: OS X
- Topic: Gui Freezing
- Replies: 5
- Views: 14897
Gui Freezing
Hello, I was wondering if anyone else is having a similar issue. I updated my computer to macOS Catalina version 10.15.7 on a macbook pro (2016) and I have successfully gotten my mod files compiled and everything ready to go. Every time I open the gui , it will work for a few minutes and then freeze...
- Wed Aug 07, 2019 5:42 pm
- Forum: OS X
- Topic: code is incompatible with this neuron version
- Replies: 1
- Views: 8846
code is incompatible with this neuron version
Hello! I am currently getting this error message when trying to use an old mod file. What should I be trying to translate it to? Kind Regards, Laura loading membrane mechanisms from /Users/lauradovek/Documents/Viji Lab/vijinet_turbo/Neuron/Dentate/x86_64/.libs/libnrnmech.so Additional mechanisms fro...
- Fri Dec 14, 2018 4:55 pm
- Forum: Getting started
- Topic: sectioning neuron based on distance from soma
- Replies: 9
- Views: 6877
Re: sectioning neuron based on distance from soma
I am working on a 3D Dentate Gyrus Granule Cell with 46 Dendrites. The model was pulled and adapted from Neurolucida so there hasn't been nseg previously defined since each dendrite is actually made up of a few dendrites. This could explain why my previous trials did not work. When I tested it, I di...
- Thu Dec 13, 2018 2:19 pm
- Forum: Getting started
- Topic: sectioning neuron based on distance from soma
- Replies: 9
- Views: 6877
Re: sectioning neuron based on distance from soma
Something like this should work: soma distance() maxdist=0 // get maximum distance forall for(x,0) if (distance(x)>maxdist) maxdist=distance(x) // generate sectionlists objref prox, mid, dist prox = new SectionList() mid = new SectionList() dist = new SectionList() forall { if (distance(0.5)/maxdis...
- Thu Dec 13, 2018 12:24 pm
- Forum: Getting started
- Topic: sectioning neuron based on distance from soma
- Replies: 9
- Views: 6877
Re: sectioning neuron based on distance from soma
If the goal is to have channel density vary gradually with distance, shouldn't channel density vary along the length of each section? In which case the distance should be measured from the proximal reference point (soma(0.5)) to the center of each segment, right? correct. And instead of three sets ...
- Tue Dec 04, 2018 12:08 pm
- Forum: Getting started
- Topic: sectioning neuron based on distance from soma
- Replies: 9
- Views: 6877
Re: sectioning neuron based on distance from soma
Hello, I apologize, I realize now the question was vague. I will do my best to explain. 1. We want to apply parameters to different part of the neuron depending on how far away from the soma is. The goal is gradually have less channels the more we move away from the soma. The goal was to take the cl...
- Fri Nov 30, 2018 5:52 pm
- Forum: Getting started
- Topic: sectioning neuron based on distance from soma
- Replies: 9
- Views: 6877
sectioning neuron based on distance from soma
Hello, I have a granule cell that was built and then imported to Neuron. Everything came out beautiful in the hoc code but now I want to section the neuron into thirds based on distance from the soma. I want to make a Proximal, Middle and Distal group so I can specify the channels on each. Is there ...
- Thu Nov 01, 2018 3:45 pm
- Forum: Getting started
- Topic: Program functions between Mac and Windows
- Replies: 3
- Views: 3857
Re: Program functions between Mac and Windows
Hello Dr. Carnevale, On the Windows computer, we are running Neuron 7.4 64 bit. with windows 7 On the Macbook Pro I am running High Sierra version 10.13.6 with Neuron 7.6 The folder was transfered from one computer to the other and then recompiled. We have all the same mod files, ses files etc. Kind...
- Wed Oct 31, 2018 3:05 pm
- Forum: Getting started
- Topic: compiling issues on Mac
- Replies: 6
- Views: 4897
Re: compiling issues on Mac
Yes, it now works! silly mistake.
Thank you Dr. Hines.
Thank you Dr. Hines.
- Wed Oct 31, 2018 3:04 pm
- Forum: Getting started
- Topic: Program functions between Mac and Windows
- Replies: 3
- Views: 3857
Program functions between Mac and Windows
Hello all, So we have a portion of the code attached below (couldn't fit the rest), that works both on a Mac and a Windows computer. However with, stim.amp = 0.2 it creates a spike surpassing threshold on the Windows computer but on the Mac we have to raise the amplitude to 0.4 in order to record a ...
- Tue Oct 30, 2018 4:41 pm
- Forum: Getting started
- Topic: compiling issues on Mac
- Replies: 6
- Views: 4897
Re: compiling issues on Mac
Hello Dr. Hines, Yes that is exactly what I am getting, and yes the x86_64 folder is in the folder containing the mod file. Last login: Mon Oct 29 14:58:57 on ttys000 :~ lauradovek$ cd desktop :desktop lauradovek$ cd Neuron/Dentate :Dentate lauradovek$ nrniv NEURON -- VERSION 7.6.2-30-gd432e20 maste...
- Fri Oct 26, 2018 8:00 pm
- Forum: Getting started
- Topic: compiling issues on Mac
- Replies: 6
- Views: 4897
Re: compiling issues on Mac
Dear Dr. Hines, Thank you for your prompt reply. I used the steps you recommended and the program is now able to open and show me the neuron that others had created. However I am still having trouble compiling. For example I am trying to compile the file: ccanl.mod This is the output when i drag the...
- Thu Oct 25, 2018 5:59 pm
- Forum: Getting started
- Topic: compiling issues on Mac
- Replies: 6
- Views: 4897
compiling issues on Mac
Hello, I am new to Neuron and am working with several of the codes developed by Dr. Santhakumar's group (several in the DB!). They previously have used it on Windows and we tested that it still works. However I am working on a MacBook Pro OS version 10.13.6 I believe my current issue is that the com...