Another problem using Modelview
Posted: Tue Aug 01, 2017 6:37 am
Hello,
since updating spyder to the newest version using 'conda update spyder', the NEURON Gui crashes and gets stuck whenever I try to open the ModelView. This happens using the nrngui -python from the command line and also when I use spyder to run python files with neuron using spyder. This also happens when trying to load the modelview hoc file manually. Then it just says 'hoc error'.
The error message I get using the gui ModelView is:
Also whenever I try to close the gui using the quit button, the (spyder) kernel crashes. Also when I try it from the command line without spyder the gui gets stuck completely and when i quit it with Cltr+D, this error message appears:
I have tried to reset my packages back using conda --revisions but the problem didn't resolve. Then I have also tried to update all packages including spyder and scipy to the newest versions. But i can't figure out how to fix it.
I am using NEURON 7.4 on a Ubuntu 16.04 machine.
It would be very nice if someone could give me advice how to fix this!
Best regards, Catharina
since updating spyder to the newest version using 'conda update spyder', the NEURON Gui crashes and gets stuck whenever I try to open the ModelView. This happens using the nrngui -python from the command line and also when I use spyder to run python files with neuron using spyder. This also happens when trying to load the modelview hoc file manually. Then it just says 'hoc error'.
The error message I get using the gui ModelView is:
Code: Select all
oc>/usr/local/nrn/x86_64/bin/nrniv: syntax error
in mview/ppanal.hoc near line 148
for is=0, size-1 {
^
xopen("mview/ppan...")
xopen("mview.hoc")
execute1("{xopen("mv...")
load_file("mview.hoc", "ModelView")
/usr/local/nrn/x86_64/bin/nrniv: mview undefined function
in mview/ppanal.hoc near line 1
{mview()}
^
mview()
execute("mview()")
Code: Select all
sqlite3.ProgrammingError: SQLite objects created in a thread can only be used in that same thread.The object was created in thread id 139692449322752 and this is thread id 139692316354304
I am using NEURON 7.4 on a Ubuntu 16.04 machine.
It would be very nice if someone could give me advice how to fix this!
Best regards, Catharina