Neuron on OSX 10.5
Posted: Tue Oct 30, 2007 4:24 am
I was wondering if anyone has had any experiences with Leopard and Neuron. Is it save to update?
However, I cannot compile my mods anymore. Here are the lines at which the compilation seems to go wrong. If you need the whole output, I can send you a file - just let me know.oc: File exists
/Applications/NEURON-6.1/nrn/umac/bin/nrniv.app/Contents/MacOS/nrniv: errno set during call of xpanel
in /Applications/NEURON-6.1/nrn/share/nrn/demo/demo.hoc near line 72
^
...
/usr/bin/ld: for architecture i386
/usr/bin/ld: /usr/lib/gcc/i686-apple-darwin8/4.0.1/../../../libreadline.dylib load command 8 unknown cmd field
/usr/bin/ld: /usr/lib/gcc/i686-apple-darwin8/4.0.1/../../../libncurses.dylib load command 8 unknown cmd field
/usr/bin/ld: /usr/lib/gcc/i686-apple-darwin8/4.0.1/../../../libpython.dylib unknown flags (type) of section 6 (__TEXT,__dof_python) in load command 0
/usr/bin/ld: /System/Library/Frameworks/Carbon.framework/Carbon load command 7 unknown cmd field
/usr/bin/ld: /usr/lib/gcc/i686-apple-darwin8/4.0.1/../../../libSystem.dylib unknown flags (type) of section 6 (__TEXT,__dof_plockstat) in load command 0
/usr/bin/ld: /usr/lib/libSystem.B.dylib unknown flags (type) of section 6 (__TEXT,__dof_plockstat) in load command 0
/usr/bin/ld: /usr/lib/libncurses.5.4.dylib load command 8 unknown cmd field
/usr/bin/ld: /usr/lib/libstdc++.6.dylib load command 8 unknown cmd field
/usr/bin/ld: /usr/lib/libgcc_s.1.dylib load command 8 unknown cmd field
/usr/bin/ld: /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon load command 7 unknown cmd field
collect2: ld returned 1 exit status
/usr/bin/ld: for architecture ppc
/usr/bin/ld: /usr/lib/gcc/powerpc-apple-darwin8/4.0.1/../../../libreadline.dylib load command 7 unknown cmd field
/usr/bin/ld: /usr/lib/gcc/powerpc-apple-darwin8/4.0.1/../../../libncurses.dylib load command 7 unknown cmd field
/usr/bin/ld: /usr/lib/gcc/powerpc-apple-darwin8/4.0.1/../../../libpython.dylib unknown flags (type) of section 7 (__TEXT,__dof_python) in load command 0
/usr/bin/ld: /System/Library/Frameworks/Carbon.framework/Carbon load command 7 unknown cmd field
/usr/bin/ld: /usr/lib/gcc/powerpc-apple-darwin8/4.0.1/../../../libSystem.dylib unknown flags (type) of section 9 (__TEXT,__dof_plockstat) in load command 0
/usr/bin/ld: /usr/lib/libSystem.B.dylib unknown flags (type) of section 9 (__TEXT,__dof_plockstat) in load command 0
/usr/bin/ld: /usr/lib/libncurses.5.4.dylib load command 7 unknown cmd field
/usr/bin/ld: /usr/lib/libstdc++.6.dylib load command 7 unknown cmd field
/usr/bin/ld: /usr/lib/libgcc_s.1.dylib load command 7 unknown cmd field
/usr/bin/ld: /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon load command 7 unknown cmd field
collect2: ld returned 1 exit status
lipo: can't open input file: /var/folders/Wv/WvY5WhenEs0rGRd-hIRCuk+++TI/-Tmp-//ccXMEi9b.out (No such file or directory)
make: *** [libnrnmech.la] Error 1
oc: File exists
/Volumes/NEURON-6.1/NEURON-6.1/nrn/umac/bin/nrniv.app/Contents/MacOS/nrniv: errno set during call of xpanel
in /Volumes/NEURON-6.1/NEURON-6.1/nrn/share/nrn/lib/hoc/nrngui.hoc near line 2
nrnmainmenu()
Was this problem ever resolved?DRA wrote:I've been having problems running NEURON-6.0 since installing the new OSX 10.5 leopard.
I'm guessing that the libtool I am using/usr/bin/ld: /usr/lib/gcc/i686-apple-darwin8/4.0.1/../../../libreadline.dylib load command 8 unknown cmd field
problem with the new 10.5 dmg of NEURON. It turns out that after you upgrade from 10.4 to 10.5 you also need to re-install the 10.5 developer tools that come with the installation dvd. Then everything works./usr/bin/ld: /Applications/NEURON-6.2/nrn/umac/lib/libnrnoc.
0.0.0.dylib load command 7 unknown cmd field