Tools of interest to NEURON users

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HNN: Human Neocortical Neurosolver
A tool for testing hypotheses about circuit mechanisms underlying EEG/MEG data
Moderator: samnemo
Topics: 10

10 Topics

18 Posts

Last post Re: Trouble with install
by mschendel View the latest post
Mon Nov 09, 2020 4:34 pm
LFPsim
Discussions about LFPsim, a tool for simulating local field potentials
Moderator: tom_morse
Topics: 3

3 Topics

11 Posts

Last post Python+MPI version now availa…
by JustasB View the latest post
Sat Dec 07, 2019 7:54 pm
NetPyNE
A Python package that facilitates development and use of models of biological neural networks
Moderator: tom_morse
Topics: 43

43 Topics

209 Posts

Last post Re: Save rxd concentration
by joe.w.graham View the latest post
Fri Jun 24, 2022 12:11 pm
SimAgent
Discussions about SimAgent, a tool for submitting jobs directly to NSG from your local computer
Moderator: tyler
Topics: 2

2 Topics

11 Posts

Last post Re: NeuroVM
by RobinDS View the latest post
Sat Nov 23, 2019 3:43 am
SimTracker
Discussions about SimTracker, a tool for managing model development and execution
Moderator: neuromau
Topics: 2

2 Topics

4 Posts

Last post Re: fscan confused with comme…
by ted View the latest post
Tue Dec 25, 2018 4:29 pm
Other tools
Topics: 4

4 Topics

8 Posts

Last post Re: convergence failed repeat…
by ramcdougal View the latest post
Fri May 08, 2020 5:02 pm

Active topics

Replies

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Last post

Save rxd concentration

Last post by joe.w.graham « Fri Jun 24, 2022 12:11 pm
Replies: 3
by Barbara » Thu Apr 07, 2022 9:50 am

3 Replies

218 Views

Last post by joe.w.graham
Fri Jun 24, 2022 12:11 pm
After updating to MacOS 12.3 Monterey

Last post by malihaahmed « Fri Mar 25, 2022 5:35 pm
Replies: 5
by malihaahmed » Thu Mar 24, 2022 5:57 pm

5 Replies

258 Views

Last post by malihaahmed
Fri Mar 25, 2022 5:35 pm
elaborate visualization of neuron morphologies and synapses

Last post by alexandrapierri « Tue Nov 16, 2021 10:28 pm
Replies: 8
by alexandrapierri » Fri Nov 12, 2021 8:24 pm

8 Replies

817 Views

Last post by alexandrapierri
Tue Nov 16, 2021 10:28 pm
Save/load state

Last post by VVolk « Fri Sep 10, 2021 2:27 pm
Replies: 2
by salvadord » Sun Nov 19, 2017 10:53 am

2 Replies

9090 Views

Last post by VVolk
Fri Sep 10, 2021 2:27 pm
LIF neuron model with GABA/AMPA/NMDA conductances

Last post by jhielson « Fri May 21, 2021 8:49 am
Replies: 4
by jhielson » Wed May 19, 2021 11:36 am

4 Replies

825 Views

Last post by jhielson
Fri May 21, 2021 8:49 am
Trouble with install

Last post by mschendel « Mon Nov 09, 2020 4:34 pm
Replies: 1
by mschendel » Mon Nov 09, 2020 4:21 pm

1 Replies

1579 Views

Last post by mschendel
Mon Nov 09, 2020 4:34 pm
Reinforcement Learning with NetPyNE: a closed-loop with external stimulation

Last post by salvadord « Mon Jul 20, 2020 10:53 am
Replies: 1
by ziemek » Sat Jul 18, 2020 4:01 pm

1 Replies

1143 Views

Last post by salvadord
Mon Jul 20, 2020 10:53 am
convergence failed repeatedly or with |h|=hmin : err=-7

Last post by ramcdougal « Fri May 08, 2020 5:02 pm
Replies: 1
by Junichi » Thu May 07, 2020 6:38 am

1 Replies

9468 Views

Last post by ramcdougal
Fri May 08, 2020 5:02 pm
Regarding HNN & NetpyneUI

Last post by salvadord « Wed Mar 04, 2020 11:00 am
Replies: 1
by arpit » Tue Feb 25, 2020 1:33 am

1 Replies

20345 Views

Last post by salvadord
Wed Mar 04, 2020 11:00 am
Stimulating network using spike trains

Last post by asb « Thu Jan 02, 2020 12:56 am
Replies: 11
by bll5z6 » Wed Jun 07, 2017 11:49 am

11 Replies

16877 Views

Last post by asb
Thu Jan 02, 2020 12:56 am
Announcing HNN version 1.2

Last post by bcaldwell « Mon Dec 23, 2019 1:39 pm

by bcaldwell » Mon Dec 23, 2019 1:39 pm

0 Replies

3194 Views

Last post by bcaldwell
Mon Dec 23, 2019 1:39 pm
Python+MPI version now available

Last post by JustasB « Sat Dec 07, 2019 7:54 pm

by JustasB » Sat Dec 07, 2019 7:54 pm

0 Replies

3449 Views

Last post by JustasB
Sat Dec 07, 2019 7:54 pm
Allen Institute Brain Modeling Tool Kit (BMTK) + Gap Junctions

Last post by ted « Fri Dec 06, 2019 11:26 am
Replies: 1
by bll5z6 » Thu Oct 31, 2019 2:02 pm

1 Replies

2445 Views

Last post by ted
Fri Dec 06, 2019 11:26 am
NeuroVM

Last post by RobinDS « Sat Nov 23, 2019 3:43 am
Replies: 4
by tyler » Wed Jul 31, 2019 2:05 pm

4 Replies

7008 Views

Last post by RobinDS
Sat Nov 23, 2019 3:43 am
Introducing Glia & Astrocyte: A NEURON package manager

Last post by RobinDS « Fri Nov 22, 2019 4:31 pm
Replies: 1
by RobinDS » Fri Nov 22, 2019 1:54 pm

1 Replies

1895 Views

Last post by RobinDS
Fri Nov 22, 2019 4:31 pm
Welcome to SimAgent

Last post by Mohamed_Hisham « Fri Nov 08, 2019 11:25 pm
Replies: 5
by tyler » Thu May 16, 2019 4:31 pm

5 Replies

4215 Views

Last post by Mohamed_Hisham
Fri Nov 08, 2019 11:25 pm
HNN events at SFN 2019

Last post by bcaldwell « Tue Oct 15, 2019 9:53 pm

by bcaldwell » Tue Oct 15, 2019 9:53 pm

0 Replies

5067 Views

Last post by bcaldwell
Tue Oct 15, 2019 9:53 pm
HNN Parameter Optimization Added/Methods Paper Released

Last post by bcaldwell « Fri Oct 04, 2019 3:45 pm

by bcaldwell » Fri Oct 04, 2019 3:45 pm

0 Replies

2041 Views

Last post by bcaldwell
Fri Oct 04, 2019 3:45 pm
Changing reversal potentials in NetPyNE

Last post by lblood « Wed Jul 24, 2019 1:30 pm
Replies: 2
by lblood » Thu Jul 11, 2019 1:16 pm

2 Replies

2451 Views

Last post by lblood
Wed Jul 24, 2019 1:30 pm
Just a test

Last post by ted « Fri Apr 19, 2019 10:24 am
Replies: 1
by ted » Fri Jun 03, 2016 3:30 pm

1 Replies

26884 Views

Last post by ted
Fri Apr 19, 2019 10:24 am
New HNN installation methods

Last post by bcaldwell « Fri Apr 12, 2019 8:45 am

by bcaldwell » Fri Apr 12, 2019 8:45 am

0 Replies

5697 Views

Last post by bcaldwell
Fri Apr 12, 2019 8:45 am
Reloading mechanisms library

Last post by salvadord « Sun Jan 27, 2019 12:25 pm
Replies: 3
by cmetzner » Thu Jan 10, 2019 8:28 am

3 Replies

3668 Views

Last post by salvadord
Sun Jan 27, 2019 12:25 pm
fscan confused with comment lines

Last post by ted « Tue Dec 25, 2018 4:29 pm
Replies: 1
by alexandrapierri » Wed Dec 19, 2018 8:34 pm

1 Replies

9745 Views

Last post by ted
Tue Dec 25, 2018 4:29 pm
Multisplit Simulation

Last post by salvadord « Mon Dec 03, 2018 10:38 am
Replies: 1
by Krishna Chaitanya » Mon Nov 26, 2018 2:13 pm

1 Replies

3288 Views

Last post by salvadord
Mon Dec 03, 2018 10:38 am
Point process not located in a section

Last post by Krishna Chaitanya « Fri Nov 30, 2018 1:46 am
Replies: 4
by Krishna Chaitanya » Tue Nov 20, 2018 6:35 am

4 Replies

3710 Views

Last post by Krishna Chaitanya
Fri Nov 30, 2018 1:46 am
NetPyNE UI

Last post by salvadord « Thu Nov 22, 2018 1:39 pm
Replies: 1
by Krishna Chaitanya » Fri Nov 16, 2018 5:43 pm

1 Replies

3550 Views

Last post by salvadord
Thu Nov 22, 2018 1:39 pm
Analysing the output data (supercomputers)

Last post by salvadord « Thu Nov 22, 2018 1:35 pm
Replies: 1
by parvinz » Wed Oct 24, 2018 11:03 pm

1 Replies

3617 Views

Last post by salvadord
Thu Nov 22, 2018 1:35 pm
HNN at SFN 2018

Last post by samnemo « Tue Oct 30, 2018 10:34 am

by samnemo » Tue Oct 30, 2018 10:34 am

0 Replies

5489 Views

Last post by samnemo
Tue Oct 30, 2018 10:34 am
Tutorials on simulating ERPs/Rhythms using HNN

Last post by samnemo « Thu Oct 11, 2018 3:20 pm
Replies: 2
by samnemo » Wed Sep 05, 2018 11:05 am

2 Replies

6900 Views

Last post by samnemo
Thu Oct 11, 2018 3:20 pm
Installation Issues

Last post by ramcdougal « Thu Oct 11, 2018 3:01 pm
Replies: 4
by samnemo » Wed Sep 05, 2018 11:01 am

4 Replies

5344 Views

Last post by ramcdougal
Thu Oct 11, 2018 3:01 pm
Importing HDF5 data to NetPyNE

Last post by salvadord « Mon Jul 30, 2018 8:56 pm
Replies: 1
by Krishna Chaitanya » Mon Jul 30, 2018 9:31 am

1 Replies

3386 Views

Last post by salvadord
Mon Jul 30, 2018 8:56 pm
Setpointer when defining a synapse

Last post by salvadord « Wed Jul 04, 2018 4:36 pm
Replies: 2
by Noémie » Fri Jun 22, 2018 4:30 am

2 Replies

3495 Views

Last post by salvadord
Wed Jul 04, 2018 4:36 pm
Spike source and target sections

Last post by bremen « Sat May 12, 2018 12:07 pm
Replies: 17
by salvadord » Mon Nov 27, 2017 12:03 pm
1

2
17 Replies

19744 Views

Last post by bremen
Sat May 12, 2018 12:07 pm
Import json format of morphology to NetPyNE

Last post by ted « Sun May 06, 2018 1:30 pm
Replies: 2
by Javad » Fri May 04, 2018 3:02 pm

2 Replies

4877 Views

Last post by ted
Sun May 06, 2018 1:30 pm
Slow speed to save sim results

Last post by bremen « Sat Apr 28, 2018 3:15 pm
Replies: 2
by bremen » Sat Apr 21, 2018 10:32 am

2 Replies

3454 Views

Last post by bremen
Sat Apr 28, 2018 3:15 pm
Field names are restricted to 31 characters

Last post by bremen « Sun Mar 25, 2018 6:21 am
Replies: 2
by bremen » Sat Mar 24, 2018 1:36 pm

2 Replies

3556 Views

Last post by bremen
Sun Mar 25, 2018 6:21 am
plotLFP

Last post by salvadord « Wed Mar 21, 2018 6:20 pm
Replies: 1
by atknox » Fri Mar 02, 2018 6:44 pm

1 Replies

3002 Views

Last post by salvadord
Wed Mar 21, 2018 6:20 pm
Mat file not saved properly in batch functions

Last post by salvadord « Thu Feb 15, 2018 11:30 am
Replies: 1
by Vittorio » Thu Feb 15, 2018 10:58 am

1 Replies

3022 Views

Last post by salvadord
Thu Feb 15, 2018 11:30 am
Gap junction support - parallel simulation?

Last post by salvadord « Thu Feb 08, 2018 12:41 pm
Replies: 3
by tmc » Wed Jan 24, 2018 10:18 pm

3 Replies

3824 Views

Last post by salvadord
Thu Feb 08, 2018 12:41 pm
Netpyne on clusters

Last post by bremen « Thu Dec 14, 2017 7:57 am
Replies: 4
by bremen » Fri Dec 08, 2017 7:55 am

4 Replies

7409 Views

Last post by bremen
Thu Dec 14, 2017 7:57 am
Bug in plasticity option

Last post by salvadord « Tue Dec 12, 2017 10:11 am
Replies: 1
by theiera » Thu Dec 07, 2017 6:17 am

1 Replies

4074 Views

Last post by salvadord
Tue Dec 12, 2017 10:11 am
plotRatePSD

Last post by salvadord « Wed Dec 06, 2017 3:19 pm
Replies: 1
by atknox » Tue Dec 05, 2017 11:39 am

1 Replies

4969 Views

Last post by salvadord
Wed Dec 06, 2017 3:19 pm
Inspect the NEURON object

Last post by theiera « Tue Dec 05, 2017 4:05 am
Replies: 1
by theiera » Tue Dec 05, 2017 3:51 am

1 Replies

4827 Views

Last post by theiera
Tue Dec 05, 2017 4:05 am
Error: sec had previously been connected to parent sec

Last post by salvadord « Tue Nov 28, 2017 10:01 am
Replies: 1
by salvadord » Tue Nov 28, 2017 10:00 am

1 Replies

5619 Views

Last post by salvadord
Tue Nov 28, 2017 10:01 am
How to set initial voltage of simulation

Last post by theiera « Mon Nov 27, 2017 9:36 am
Replies: 6
by bwjmbb17 » Mon Jun 19, 2017 2:43 pm

6 Replies

14004 Views

Last post by theiera
Mon Nov 27, 2017 9:36 am
Welcome to the SimTracker Forum!

Last post by alexandrapierri « Tue Nov 21, 2017 10:22 pm
Replies: 1
by neuromau » Mon Jun 06, 2016 11:01 pm

1 Replies

23527 Views

Last post by alexandrapierri
Tue Nov 21, 2017 10:22 pm
C++ memory? error, using NetPyNE

Last post by salvadord « Fri Nov 17, 2017 6:45 pm
Replies: 10
by ecker.andris » Tue Oct 24, 2017 4:50 pm

10 Replies

18396 Views

Last post by salvadord
Fri Nov 17, 2017 6:45 pm
Setup for multiple runs of the same model

Last post by salvadord « Sun Oct 22, 2017 10:13 pm
Replies: 3
by theiera » Wed Oct 18, 2017 12:28 pm

3 Replies

11190 Views

Last post by salvadord
Sun Oct 22, 2017 10:13 pm
Issue running model with 20 cores or more

Last post by salvadord « Wed Oct 18, 2017 7:06 pm
Replies: 7
by bwjmbb17 » Tue Aug 08, 2017 1:56 pm

7 Replies

13181 Views

Last post by salvadord
Wed Oct 18, 2017 7:06 pm
Examples how to use the plotShape function

Last post by salvadord « Fri Sep 01, 2017 1:12 pm
Replies: 7
by Vittorio » Wed Aug 30, 2017 4:32 pm

7 Replies

14643 Views

Last post by salvadord
Fri Sep 01, 2017 1:12 pm

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