Anatomically detailed models

New Topic

211 topics

Topics

Replies

Views

Last post

Importing SWC files and best practices

Last post by ted « Sun Sep 08, 2024 1:21 pm
Replies: 3
by JBall » Thu Sep 05, 2024 6:20 pm

3 Replies

114 Views

Last post by ted
Sun Sep 08, 2024 1:21 pm
Interpreting the results of electrotonic analysis

Last post by bril27 « Wed Sep 27, 2023 9:03 pm
Replies: 6
by bril27 » Tue Sep 26, 2023 4:14 am

6 Replies

55937 Views

Last post by bril27
Wed Sep 27, 2023 9:03 pm
Voltage gradient and color scale in anatomically detailed model in Python

Last post by ramcdougal « Sun Sep 03, 2023 4:36 pm
Replies: 1
by bril27 » Thu Aug 24, 2023 7:12 am

1 Replies

22679 Views

Last post by ramcdougal
Sun Sep 03, 2023 4:36 pm
Setting RMP according to experimental measurements.

Last post by ted « Mon Jul 24, 2023 11:01 am
Replies: 5
by alexandrapierri » Thu Jul 20, 2023 7:48 pm

5 Replies

24339 Views

Last post by ted
Mon Jul 24, 2023 11:01 am
All or none action potentials?

Last post by ted « Sun May 14, 2023 11:42 am
Replies: 1
by alexandrapierri » Wed May 10, 2023 11:49 pm

1 Replies

16157 Views

Last post by ted
Sun May 14, 2023 11:42 am
Compartments vs Segments vs Sections

Last post by ted « Wed May 03, 2023 12:20 pm
Replies: 8
by jdlawson » Fri Apr 21, 2023 1:16 pm

8 Replies

19857 Views

Last post by ted
Wed May 03, 2023 12:20 pm
Extracellular Fields

Last post by tonyclick « Wed Apr 12, 2023 10:28 pm
Replies: 30
by Sherif » Thu Oct 13, 2005 5:14 pm
1

2

3
30 Replies

95941 Views

Last post by tonyclick
Wed Apr 12, 2023 10:28 pm
Segmentation violation error in swc

Last post by alexandrapierri « Mon Mar 20, 2023 10:33 pm
Replies: 4
by alexandrapierri » Fri Mar 17, 2023 3:15 pm

4 Replies

16775 Views

Last post by alexandrapierri
Mon Mar 20, 2023 10:33 pm
cells don't fire without axon

Last post by ted « Sun Feb 26, 2023 11:06 am
Replies: 1
by alexandrapierri » Fri Feb 24, 2023 9:17 pm

1 Replies

11073 Views

Last post by ted
Sun Feb 26, 2023 11:06 am
EOF in fscan

Last post by alexandrapierri « Fri Feb 24, 2023 9:08 pm
Replies: 2
by alexandrapierri » Mon Feb 20, 2023 5:54 pm

2 Replies

11011 Views

Last post by alexandrapierri
Fri Feb 24, 2023 9:08 pm
SWC file content

Last post by ted « Thu Jan 05, 2023 12:23 pm
Replies: 6
by alexandrapierri » Mon Jan 02, 2023 5:24 pm

6 Replies

13943 Views

Last post by ted
Thu Jan 05, 2023 12:23 pm
Uploading .swc file through .hoc

Last post by ted « Mon Apr 25, 2022 11:46 am
Replies: 3
by neuron121! » Sat Apr 02, 2022 2:13 pm

3 Replies

13874 Views

Last post by ted
Mon Apr 25, 2022 11:46 am
File browser dialog missing in Import3D

Last post by hines « Mon Oct 11, 2021 10:49 am
Replies: 26
by bsuter » Mon Sep 27, 2010 10:53 am
1

2
26 Replies

52813 Views

Last post by hines
Mon Oct 11, 2021 10:49 am
Importing Imaris files using import 3D tool

Last post by ted « Tue Sep 21, 2021 5:25 pm
Replies: 3
by mehaj » Mon Sep 13, 2021 2:58 am

3 Replies

14311 Views

Last post by ted
Tue Sep 21, 2021 5:25 pm
Error in loading morphology from swc file

Last post by ted « Sat Sep 18, 2021 1:02 am
Replies: 4
by Feanor » Fri Sep 17, 2021 11:04 am

4 Replies

14370 Views

Last post by ted
Sat Sep 18, 2021 1:02 am
cable model with manual diameters and dynamics

Last post by ted « Fri Sep 17, 2021 9:59 am
Replies: 1
by shirin » Fri Sep 17, 2021 3:32 am

1 Replies

12798 Views

Last post by ted
Fri Sep 17, 2021 9:59 am
Import3d tool via Jupyter

Last post by landoskape « Fri Aug 27, 2021 6:49 pm
Replies: 2
by landoskape » Thu Aug 12, 2021 11:37 am

2 Replies

14292 Views

Last post by landoskape
Fri Aug 27, 2021 6:49 pm
Looking for a model illustrating spike frequency adaptation

Last post by careBearStare « Fri Jul 09, 2021 8:23 pm
Replies: 2
by careBearStare » Tue Jul 06, 2021 8:59 pm

2 Replies

13123 Views

Last post by careBearStare
Fri Jul 09, 2021 8:23 pm
NEURON changes dendrite diameter to default value

Last post by schmidla « Fri Mar 05, 2021 3:22 am
Replies: 4
by schmidla » Tue Mar 02, 2021 11:54 am

4 Replies

14268 Views

Last post by schmidla
Fri Mar 05, 2021 3:22 am
Loading a morphology as a hoc file

Last post by ted « Wed Mar 03, 2021 2:53 pm
Replies: 9
by sohaib786 » Thu Feb 25, 2021 9:02 am

9 Replies

17152 Views

Last post by ted
Wed Mar 03, 2021 2:53 pm
The effect of changed dt and steps_per_ms

Last post by ted « Tue Jan 19, 2021 11:08 am
Replies: 3
by Christine Chung » Wed Jan 13, 2021 2:45 am

3 Replies

13524 Views

Last post by ted
Tue Jan 19, 2021 11:08 am
Questions about geometry & area(x)

Last post by ted « Thu Sep 10, 2020 12:29 am
Replies: 3
by agmccrei » Fri Sep 11, 2015 2:44 am

3 Replies

21173 Views

Last post by ted
Thu Sep 10, 2020 12:29 am
morphology altered when Import3d exports to CellBuilder

Last post by DavidSwygart « Mon May 11, 2020 10:45 pm
Replies: 4
by DavidSwygart » Mon Apr 27, 2020 12:13 am

4 Replies

14808 Views

Last post by DavidSwygart
Mon May 11, 2020 10:45 pm
importing .asc (Neurolucida ASCII) files with Python

Last post by ted « Fri Apr 24, 2020 10:41 am
Replies: 4
by hjunji21 » Tue Jun 05, 2018 5:29 pm

4 Replies

20693 Views

Last post by ted
Fri Apr 24, 2020 10:41 am
Neuron transforms soma that is loaded from .swc. What is the rule for it?

Last post by vogdb « Fri Feb 21, 2020 7:12 am
Replies: 4
by vogdb » Mon Feb 10, 2020 6:58 am

4 Replies

16147 Views

Last post by vogdb
Fri Feb 21, 2020 7:12 am
altering length and diameter over a subset

Last post by ted « Sun Dec 22, 2019 9:36 pm
Replies: 1
by fabien tell » Fri Dec 20, 2019 9:41 am

1 Replies

12939 Views

Last post by ted
Sun Dec 22, 2019 9:36 pm
Is there any way to bifurcate axon?

Last post by ted « Wed Dec 18, 2019 9:10 pm
Replies: 3
by Christine Chung » Tue Dec 17, 2019 12:02 am

3 Replies

15563 Views

Last post by ted
Wed Dec 18, 2019 9:10 pm
Precise 3D morphology

Last post by ted « Thu Dec 12, 2019 10:49 am
Replies: 6
by ziemek » Tue Dec 10, 2019 2:41 pm

6 Replies

16808 Views

Last post by ted
Thu Dec 12, 2019 10:49 am
measurments of area by section

Last post by fabien tell « Mon Nov 18, 2019 7:22 am
Replies: 2
by fabien tell » Fri Nov 15, 2019 8:55 am

2 Replies

13603 Views

Last post by fabien tell
Mon Nov 18, 2019 7:22 am
3D rotation in Cell Builder

Last post by ted « Wed Oct 09, 2019 10:29 am
Replies: 3
by DavidSwygart » Fri Oct 04, 2019 5:37 pm

3 Replies

15165 Views

Last post by ted
Wed Oct 09, 2019 10:29 am
Export to .hoc with CellBuilder from Python

Last post by vogdb « Wed Sep 11, 2019 12:07 pm
Replies: 2
by vogdb » Tue Sep 10, 2019 12:32 pm

2 Replies

12988 Views

Last post by vogdb
Wed Sep 11, 2019 12:07 pm
Save model's biophysics and morphology programmatically to .hoc

Last post by vogdb « Wed Sep 04, 2019 6:42 am
Replies: 3
by vogdb » Tue Sep 03, 2019 11:25 am

3 Replies

12974 Views

Last post by vogdb
Wed Sep 04, 2019 6:42 am
How does 'Z. F. Mainen and T. J. Sejnowski (1996)' model work?

Last post by Christine Chung « Fri Aug 09, 2019 1:48 am
Replies: 2
by Christine Chung » Thu Aug 08, 2019 7:51 am

2 Replies

14229 Views

Last post by Christine Chung
Fri Aug 09, 2019 1:48 am
Neurolucida to NEURON best practices?

Last post by hines « Tue Jul 16, 2019 8:34 pm
Replies: 26
by bsuter » Fri Oct 29, 2010 2:36 am
1

2
26 Replies

59788 Views

Last post by hines
Tue Jul 16, 2019 8:34 pm
Morphology import error

Last post by ted « Mon Jul 15, 2019 3:30 pm
Replies: 4
by shyam_u2 » Tue Jul 02, 2019 10:07 am

4 Replies

14678 Views

Last post by ted
Mon Jul 15, 2019 3:30 pm
Guidance on plotting cell's geometry in Python?

Last post by JustasB « Wed Jun 12, 2019 8:43 pm
Replies: 4
by dgalt » Fri May 20, 2016 12:02 pm

4 Replies

21452 Views

Last post by JustasB
Wed Jun 12, 2019 8:43 pm
converting hoc to swc

Last post by ted « Sun Jun 09, 2019 8:50 am
Replies: 7
by mflynn » Thu Feb 08, 2007 7:00 pm

7 Replies

23500 Views

Last post by ted
Sun Jun 09, 2019 8:50 am
Recreating JUST the morphology from an available model (that is coded in an unfamiliar way)

Last post by sbrich « Tue May 07, 2019 4:21 pm
Replies: 3
by sbrich » Fri May 03, 2019 10:46 am

3 Replies

14773 Views

Last post by sbrich
Tue May 07, 2019 4:21 pm
Confusion regarding get_loc and h.cas

Last post by ted « Fri Mar 15, 2019 11:35 am
Replies: 11
by sbrich » Thu Mar 07, 2019 3:03 pm

11 Replies

21737 Views

Last post by ted
Fri Mar 15, 2019 11:35 am
BioPhysical properties of imported morphology in Python

Last post by ted « Tue Mar 12, 2019 10:57 am
Replies: 9
by sohaib786 » Tue Mar 05, 2019 9:16 am

9 Replies

16676 Views

Last post by ted
Tue Mar 12, 2019 10:57 am
Placing a point process at a known 3D location

Last post by ted « Tue Dec 18, 2018 6:39 pm
Replies: 3
by DavidSwygart » Tue Dec 11, 2018 11:45 am

3 Replies

15341 Views

Last post by ted
Tue Dec 18, 2018 6:39 pm
Using Impedance Class for model with Ca accumulation

Last post by Darshan « Thu Sep 27, 2018 10:52 am
Replies: 8
by Darshan » Sat Sep 22, 2018 8:44 am

8 Replies

20120 Views

Last post by Darshan
Thu Sep 27, 2018 10:52 am
GUID keyword error when importing .asc

Last post by ted « Tue Sep 18, 2018 2:06 pm
Replies: 3
by aeronlaffere » Fri Aug 31, 2018 12:26 pm

3 Replies

15394 Views

Last post by ted
Tue Sep 18, 2018 2:06 pm
How to calculate calcium concentration in multi-compartment model

Last post by ted « Fri Sep 14, 2018 12:21 pm
Replies: 2
by NorthWang » Sun Sep 02, 2018 7:55 am

2 Replies

14924 Views

Last post by ted
Fri Sep 14, 2018 12:21 pm
how to calculate section area

Last post by fabien tell « Tue Aug 28, 2018 11:44 am
Replies: 5
by fabien tell » Mon Aug 27, 2018 5:29 am

5 Replies

17420 Views

Last post by fabien tell
Tue Aug 28, 2018 11:44 am
area() function -- stylized method -- 3d-method

Last post by ngreiner « Tue Aug 28, 2018 4:00 am
Replies: 4
by ngreiner » Mon Aug 27, 2018 5:58 pm

4 Replies

16856 Views

Last post by ngreiner
Tue Aug 28, 2018 4:00 am
Changing diameters of reconstructed neurons

Last post by ted « Tue Jul 31, 2018 10:47 am
Replies: 5
by Tuoma » Mon Jul 30, 2018 3:47 am

5 Replies

16730 Views

Last post by ted
Tue Jul 31, 2018 10:47 am
Use import3D_swc_read to read the morphology from swc file

Last post by ted « Thu Jul 19, 2018 7:44 am
Replies: 2
by zyc » Thu Jul 19, 2018 2:55 am

2 Replies

17220 Views

Last post by ted
Thu Jul 19, 2018 7:44 am
Utilizing morphology from IMARIS: help classifying "filaments" as basal/apical dendrites, etc

Last post by ted « Wed Jul 18, 2018 3:58 pm
Replies: 6
by sbrich » Tue Jul 17, 2018 12:46 pm

6 Replies

16596 Views

Last post by ted
Wed Jul 18, 2018 3:58 pm
Making whole cells out of Mcintyre myelinated axon model (2002) and testing short and long-term plasticity between them

Last post by moeskiski « Tue Jul 17, 2018 12:17 pm
Replies: 15
by moeskiski » Mon Jun 11, 2018 6:34 am
1

2
15 Replies

36295 Views

Last post by moeskiski
Tue Jul 17, 2018 12:17 pm

New Topic

211 topics

Return to Board Index

Forum permissions

You cannot post new topics in this forum
You cannot reply to topics in this forum
You cannot edit your posts in this forum
You cannot delete your posts in this forum