MultiCompartmentReaction Section List Mismatch
Posted: Fri Apr 10, 2020 4:17 pm
I've been running into an issue and I'm curious what sort of work arounds may be available. My model previously had all sections with a region that was the cytosol and a region that was the endoplasmic reticulum (er). Now I'm making synaptic spines which don't always have ER, so I tried making regions where the cytosol region had more sections than the er region. But as soon as I tried to set up a vector to record a value I got this error
I made a simple test script and was able to replicate this error when the two regions don't completely overlap in terms of sections and there is a MultiCompartmentReaction between the two regions.
Is there a work around for this? I could make a separate region for the synaptic spine sections, but how would I implement axial diffusion between two regions? Is there a way to connect regions that I'm overlooking?
Code: Select all
raise RxDException("Rates and Reactions with species defined on different regions are not currently supported.")
Is there a work around for this? I could make a separate region for the synaptic spine sections, but how would I implement axial diffusion between two regions? Is there a way to connect regions that I'm overlooking?