Notice that NEURON-7.2 guesses i386, others guess i686:
Code: Select all
Macintosh-4% cd ~/NEURON/iv-17
Macintosh-4% ./config.guess
i686-apple-darwin9.8.0
Macintosh-4% cd ../nrn-7.1
Macintosh-4% ./config.guess
i686-apple-darwin9.8.0
Macintosh-4% cd ../nrn-7.2
Macintosh-4% ./config.guess
i386-apple-darwin9.8.0
Configuring iv-17 with
Code: Select all
/configure --prefix=$IDIR/iv --build=i386
has in it's output:
Code: Select all
checking build system type... i386-pc-none
checking host system type... i386-pc-none
Configuring nrn-7.2 with
Code: Select all
./configure --prefix=$IDIR/nrn --with-iv=$IDIR/iv --with-nrnpython PYLIB='-framework Python' PYLIBLINK='-framework Python' --build=i386 --with-paranrn
has in it's output:
Code: Select all
checking build system type... i386-pc-none
checking host system type... i386-pc-none
and the Makefile says:
Code: Select all
build_triplet = i386-pc-none
host_triplet = i386-pc-none
and make produces the error
Code: Select all
Undefined symbols:
"_PyObject_Str", referenced from:
_nrnpy_decref_defer in libnrnpython.a(nrnpy_p2h.o)
_nrnpy_decref_clear in libnrnpython.a(nrnpy_p2h.o)
_hoccommand_exec_strret in libnrnpython.a(nrnpy_p2h.o)
_guigetstr in libnrnpython.a(nrnpy_p2h.o)
_pysec_name in libnrnpython.a(nrnpy_nrn.o)
"_PyObject_GenericGetAttr", referenced from:
_hocobj_getattr in libnrnpython.a(nrnpy_hoc.o)
_hocobj_getattr in libnrnpython.a(nrnpy_hoc.o)
_hocobj_getattr in libnrnpython.a(nrnpy_hoc.o)
_hocobj_getattro in libnrnpython.a(nrnpy_hoc.o)
_section_getattro in libnrnpython.a(nrnpy_nrn.o)
_segment_getattro in libnrnpython.a(nrnpy_nrn.o)
_mech_getattro in libnrnpython.a(nrnpy_nrn.o)
"_PyTuple_Pack", referenced from:
hoccommand_exec_help1(_object*) in libnrnpython.a(nrnpy_p2h.o)
_grphcmdtool in libnrnpython.a(nrnpy_p2h.o)
pickle(_object*, unsigned long*)in libnrnpython.a(nrnpy_p2h.o)
_pickle2po in libnrnpython.a(nrnpy_p2h.o)
_call_picklef in libnrnpython.a(nrnpy_p2h.o)
"_PyIter_Next", referenced from:
_nrnpy_vec_from_python in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_vec_from_python in libnrnpython.a(nrnpy_hoc.o)
"_PyExc_LookupError", referenced from:
_PyExc_LookupError$non_lazy_ptr in libnrnpython.a(nrnpy_hoc.o)
"_PyLong_AsVoidPtr", referenced from:
_double_array_interface in libnrnpython.a(nrnpy_hoc.o)
"_PyTuple_Size", referenced from:
_fcall in libnrnpython.a(nrnpy_hoc.o)
_double_array_interface in libnrnpython.a(nrnpy_hoc.o)
"_PyThreadState_Swap", referenced from:
_nrnpython_ensure_threadstate in libnrnpython.a(nrnpython.o)
"_PyExc_AttributeError", referenced from:
_PyExc_AttributeError$non_lazy_ptr in libnrnpython.a(nrnpy_hoc.o)
"_PyType_IsSubtype", referenced from:
_nrnpy_po2ho in libnrnpython.a(nrnpy_hoc.o)
_hocobj_new in libnrnpython.a(nrnpy_hoc.o)
_hocobj_setattro in libnrnpython.a(nrnpy_hoc.o)
_setpointer in libnrnpython.a(nrnpy_hoc.o)
_o2loc in libnrnpython.a(nrnpy_nrn.o)
_NPySecObj_connect in libnrnpython.a(nrnpy_nrn.o)
_NPySecObj_connect in libnrnpython.a(nrnpy_nrn.o)
_nrnpy_pushsec in libnrnpython.a(nrnpy_nrn.o)
_nrnpy_setpointer_helper in libnrnpython.a(nrnpy_nrn.o)
"_PyString_FromString", referenced from:
_pickle2po in libnrnpython.a(nrnpy_p2h.o)
_call_picklef in libnrnpython.a(nrnpy_p2h.o)
_NPySecObj_name in libnrnpython.a(nrnpy_nrn.o)
_NPyMechObj_name in libnrnpython.a(nrnpy_nrn.o)
_NPyRangeVar_name in libnrnpython.a(nrnpy_nrn.o)
_NPyRangeVar_name in libnrnpython.a(nrnpy_nrn.o)
"_PyObject_GetAttr", referenced from:
_guigetval in libnrnpython.a(nrnpy_p2h.o)
_guigetstr in libnrnpython.a(nrnpy_p2h.o)
"_PyObject_HasAttrString", referenced from:
_double_array_interface in libnrnpython.a(nrnpy_hoc.o)
"__Py_NoneStruct", referenced from:
__Py_NoneStruct$non_lazy_ptr in libnrnpython.a(nrnpy_hoc.o)
__Py_NoneStruct$non_lazy_ptr in libnrnpython.a(nrnpy_nrn.o)
"_PyList_SetItem", referenced from:
_nrnpy_vec_to_python in libnrnpython.a(nrnpy_hoc.o)
"_PyType_Ready", referenced from:
_nrnpy_hoc in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_nrn in libnrnpython.a(nrnpy_nrn.o)
_nrnpy_nrn in libnrnpython.a(nrnpy_nrn.o)
_nrnpy_nrn in libnrnpython.a(nrnpy_nrn.o)
_nrnpy_nrn in libnrnpython.a(nrnpy_nrn.o)
"_PyErr_Occurred", referenced from:
_double_array_interface in libnrnpython.a(nrnpy_hoc.o)
"_PyObject_GetItem", referenced from:
_py2n_component in libnrnpython.a(nrnpy_p2h.o)
"_PyObject_GetIter", referenced from:
_nrnpy_vec_from_python in libnrnpython.a(nrnpy_hoc.o)
"_PyRun_StringFlags", referenced from:
_py2n_component in libnrnpython.a(nrnpy_p2h.o)
"_PyExc_ImportError", referenced from:
_PyExc_ImportError$non_lazy_ptr in libnrnpython.a(nrnpy_hoc.o)
"_PyList_New", referenced from:
_nrnpy_vec_to_python in libnrnpython.a(nrnpy_hoc.o)
_seg_point_processes in libnrnpython.a(nrnpy_nrn.o)
"_PyArg_Parse", referenced from:
_set_final_from_stk in libnrnpython.a(nrnpy_hoc.o)
_set_final_from_stk in libnrnpython.a(nrnpy_hoc.o)
_set_final_from_stk in libnrnpython.a(nrnpy_hoc.o)
_hocobj_setattro in libnrnpython.a(nrnpy_hoc.o)
_hocobj_setattro in libnrnpython.a(nrnpy_hoc.o)
_hocobj_setattro in libnrnpython.a(nrnpy_hoc.o)
_hocobj_setitem in libnrnpython.a(nrnpy_hoc.o)
_hocobj_setitem in libnrnpython.a(nrnpy_hoc.o)
_hocobj_setitem in libnrnpython.a(nrnpy_hoc.o)
_hocobj_setitem in libnrnpython.a(nrnpy_hoc.o)
_hocobj_setitem in libnrnpython.a(nrnpy_hoc.o)
_hocobj_setitem in libnrnpython.a(nrnpy_hoc.o)
_section_setattro in libnrnpython.a(nrnpy_nrn.o)
_section_setattro in libnrnpython.a(nrnpy_nrn.o)
_section_setattro in libnrnpython.a(nrnpy_nrn.o)
_section_setattro in libnrnpython.a(nrnpy_nrn.o)
_section_setattro in libnrnpython.a(nrnpy_nrn.o)
_segment_setattro in libnrnpython.a(nrnpy_nrn.o)
_segment_setattro in libnrnpython.a(nrnpy_nrn.o)
_mech_setattro in libnrnpython.a(nrnpy_nrn.o)
_rv_setitem in libnrnpython.a(nrnpy_nrn.o)
"_PyObject_HasAttr", referenced from:
_hocobj_setattro in libnrnpython.a(nrnpy_hoc.o)
"__PyThreadState_Current", referenced from:
__PyThreadState_Current$non_lazy_ptr in libnrnpython.a(nrnpython.o)
"_Py_Initialize", referenced from:
_nrnpython_start in libnrnpython.a(nrnpython.o)
"_PyModule_GetDict", referenced from:
_nrnpy_hoc2pyobject in libnrnpython.a(nrnpy_p2h.o)
_py2n_component in libnrnpython.a(nrnpy_p2h.o)
"_PyList_Append", referenced from:
_seg_point_processes in libnrnpython.a(nrnpy_nrn.o)
"_PyRun_InteractiveLoopFlags", referenced from:
_nrnpython_start in libnrnpython.a(nrnpython.o)
"_PyExc_RuntimeError", referenced from:
_PyExc_RuntimeError$non_lazy_ptr in libnrnpython.a(nrnpy_hoc.o)
"_PyTuple_GetItem", referenced from:
hoccommand_exec_help1(_object*) in libnrnpython.a(nrnpy_p2h.o)
hoccommand_exec_help1(_object*) in libnrnpython.a(nrnpy_p2h.o)
_guigetval in libnrnpython.a(nrnpy_p2h.o)
_guigetval in libnrnpython.a(nrnpy_p2h.o)
_guisetval in libnrnpython.a(nrnpy_p2h.o)
_guisetval in libnrnpython.a(nrnpy_p2h.o)
_guigetstr in libnrnpython.a(nrnpy_p2h.o)
_guigetstr in libnrnpython.a(nrnpy_p2h.o)
_fcall in libnrnpython.a(nrnpy_hoc.o)
_fcall in libnrnpython.a(nrnpy_hoc.o)
_double_array_interface in libnrnpython.a(nrnpy_hoc.o)
_double_array_interface in libnrnpython.a(nrnpy_hoc.o)
"_PyImport_ImportModule", referenced from:
setpickle() in libnrnpython.a(nrnpy_p2h.o)
setpickle() in libnrnpython.a(nrnpy_p2h.o)
_hocobj_getattr in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_hoc in libnrnpython.a(nrnpy_hoc.o)
"_PyLong_FromVoidPtr", referenced from:
_hocobj_getattr in libnrnpython.a(nrnpy_hoc.o)
_hocobj_vptr in libnrnpython.a(nrnpy_hoc.o)
"_PyTuple_New", referenced from:
_py2n_component in libnrnpython.a(nrnpy_p2h.o)
hoccommand_exec_help1(_object*) in libnrnpython.a(nrnpy_p2h.o)
_call_picklef in libnrnpython.a(nrnpy_p2h.o)
"_PyString_Size", referenced from:
pickle(_object*, unsigned long*)in libnrnpython.a(nrnpy_p2h.o)
"_PyObject_CallObject", referenced from:
_nrnpy_pyCallObject in libnrnpython.a(nrnpy_p2h.o)
_hocobj_getattr in libnrnpython.a(nrnpy_hoc.o)
"_Py_BuildValue", referenced from:
_hpoasgn in libnrnpython.a(nrnpy_p2h.o)
_py2n_component in libnrnpython.a(nrnpy_p2h.o)
_praxis_efun in libnrnpython.a(nrnpy_p2h.o)
_nrnexec in libnrnpython.a(nrnpy_hoc.o)
_hoc_ac in libnrnpython.a(nrnpy_hoc.o)
_hocobj_name in libnrnpython.a(nrnpy_hoc.o)
_hocobj_name in libnrnpython.a(nrnpy_hoc.o)
_hocobj_name in libnrnpython.a(nrnpy_hoc.o)
_hocobj_name in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_ho2po in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_hoc_pop in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_hoc_pop in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_hoc_pop in libnrnpython.a(nrnpy_hoc.o)
_symlist2dict in libnrnpython.a(nrnpy_hoc.o)
_hocobj_getattr in libnrnpython.a(nrnpy_hoc.o)
_hocobj_getattr in libnrnpython.a(nrnpy_hoc.o)
_hocobj_getattr in libnrnpython.a(nrnpy_hoc.o)
_hocobj_getattr in libnrnpython.a(nrnpy_hoc.o)
_hocobj_getitem in libnrnpython.a(nrnpy_hoc.o)
_hocobj_getitem in libnrnpython.a(nrnpy_hoc.o)
_hocobj_vptr in libnrnpython.a(nrnpy_hoc.o)
_section_getattro in libnrnpython.a(nrnpy_nrn.o)
_section_getattro in libnrnpython.a(nrnpy_nrn.o)
_section_getattro in libnrnpython.a(nrnpy_nrn.o)
_segment_getattro in libnrnpython.a(nrnpy_nrn.o)
_mech_getattro in libnrnpython.a(nrnpy_nrn.o)
_NPySecObj_call in libnrnpython.a(nrnpy_nrn.o)
_rv_getitem in libnrnpython.a(nrnpy_nrn.o)
_nrnpy_reg_mech in libnrnpython.a(nrnpy_nrn.o)
"_PyObject_Type", referenced from:
_hocobj_getattro in libnrnpython.a(nrnpy_hoc.o)
_hocobj_setattro in libnrnpython.a(nrnpy_hoc.o)
"_PyErr_Clear", referenced from:
_nrnpy_numbercheck in libnrnpython.a(nrnpy_hoc.o)
_hocobj_getattro in libnrnpython.a(nrnpy_hoc.o)
"_PyExc_NameError", referenced from:
_PyExc_NameError$non_lazy_ptr in libnrnpython.a(nrnpy_nrn.o)
"_PyImport_AddModule", referenced from:
_nrnpy_hoc2pyobject in libnrnpython.a(nrnpy_p2h.o)
_py2n_component in libnrnpython.a(nrnpy_p2h.o)
"_PyInt_FromLong", referenced from:
_grphcmdtool in libnrnpython.a(nrnpy_p2h.o)
_grphcmdtool in libnrnpython.a(nrnpy_p2h.o)
"__Py_TrueStruct", referenced from:
__Py_TrueStruct$non_lazy_ptr in libnrnpython.a(nrnpy_hoc.o)
"_PySequence_SetItem", referenced from:
_nrnpy_vec_to_python in libnrnpython.a(nrnpy_hoc.o)
"_PyFloat_AsDouble", referenced from:
_py2n_component in libnrnpython.a(nrnpy_p2h.o)
_praxis_efun in libnrnpython.a(nrnpy_p2h.o)
_guigetval in libnrnpython.a(nrnpy_p2h.o)
_fcall in libnrnpython.a(nrnpy_hoc.o)
_mkref in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_vec_from_python in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_vec_from_python in libnrnpython.a(nrnpy_hoc.o)
"_PyErr_SetString", referenced from:
_getsym in libnrnpython.a(nrnpy_hoc.o)
_set_final_from_stk in libnrnpython.a(nrnpy_hoc.o)
_hocobj_call in libnrnpython.a(nrnpy_hoc.o)
_hocobj_call in libnrnpython.a(nrnpy_hoc.o)
_hocobj_new in libnrnpython.a(nrnpy_hoc.o)
_hocobj_getattr in libnrnpython.a(nrnpy_hoc.o)
_hocobj_getattr in libnrnpython.a(nrnpy_hoc.o)
_hocobj_getattr in libnrnpython.a(nrnpy_hoc.o)
_hocobj_setattro in libnrnpython.a(nrnpy_hoc.o)
_araychk in libnrnpython.a(nrnpy_hoc.o)
_hocobj_iter in libnrnpython.a(nrnpy_hoc.o)
_hocobj_getitem in libnrnpython.a(nrnpy_hoc.o)
_hocobj_getitem in libnrnpython.a(nrnpy_hoc.o)
_hocobj_setitem in libnrnpython.a(nrnpy_hoc.o)
_hocobj_setitem in libnrnpython.a(nrnpy_hoc.o)
_mkref in libnrnpython.a(nrnpy_hoc.o)
_setpointer in libnrnpython.a(nrnpy_hoc.o)
_hocobj_vptr in libnrnpython.a(nrnpy_hoc.o)
_double_array_interface in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_hoc in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_hoc in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_hoc in libnrnpython.a(nrnpy_hoc.o)
_NPySegObj_new in libnrnpython.a(nrnpy_nrn.o)
_NPySegObj_init in libnrnpython.a(nrnpy_nrn.o)
_NPySecObj_connect in libnrnpython.a(nrnpy_nrn.o)
_NPySecObj_connect in libnrnpython.a(nrnpy_nrn.o)
_rv_noexist in libnrnpython.a(nrnpy_nrn.o)
_rv_noexist in libnrnpython.a(nrnpy_nrn.o)
_rv_noexist in libnrnpython.a(nrnpy_nrn.o)
_section_setattro in libnrnpython.a(nrnpy_nrn.o)
_section_setattro in libnrnpython.a(nrnpy_nrn.o)
_section_setattro in libnrnpython.a(nrnpy_nrn.o)
_segment_setattro in libnrnpython.a(nrnpy_nrn.o)
_segment_setattro in libnrnpython.a(nrnpy_nrn.o)
_segment_setattro in libnrnpython.a(nrnpy_nrn.o)
_mech_setattro in libnrnpython.a(nrnpy_nrn.o)
_rv_getitem in libnrnpython.a(nrnpy_nrn.o)
_rv_setitem in libnrnpython.a(nrnpy_nrn.o)
_rv_setitem in libnrnpython.a(nrnpy_nrn.o)
_NPySecObj_insert in libnrnpython.a(nrnpy_nrn.o)
"_PyNumber_Check", referenced from:
_nrnpy_numbercheck in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_vec_from_python in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_vec_from_python in libnrnpython.a(nrnpy_hoc.o)
"_Py_Finalize", referenced from:
_nrnpython_start in libnrnpython.a(nrnpython.o)
"_PyObject_GenericSetAttr", referenced from:
_hocobj_setattro in libnrnpython.a(nrnpy_hoc.o)
_hocobj_setattro in libnrnpython.a(nrnpy_hoc.o)
_section_setattro in libnrnpython.a(nrnpy_nrn.o)
_segment_setattro in libnrnpython.a(nrnpy_nrn.o)
_mech_setattro in libnrnpython.a(nrnpy_nrn.o)
"_PyInt_AsLong", referenced from:
_segment_getattro in libnrnpython.a(nrnpy_nrn.o)
_NPySecObj_insert in libnrnpython.a(nrnpy_nrn.o)
"__PyObject_NextNotImplemented", referenced from:
__PyObject_NextNotImplemented$non_lazy_ptr in libnrnpython.a(nrnpy_hoc.o)
"_PySequence_Size", referenced from:
_nrnpy_vec_from_python in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_vec_to_python in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_vec_to_python in libnrnpython.a(nrnpy_hoc.o)
"_PyString_AsString", referenced from:
_nrnpy_decref_defer in libnrnpython.a(nrnpy_p2h.o)
_py2n_component in libnrnpython.a(nrnpy_p2h.o)
_nrnpy_decref_clear in libnrnpython.a(nrnpy_p2h.o)
_hoccommand_exec_strret in libnrnpython.a(nrnpy_p2h.o)
_guigetstr in libnrnpython.a(nrnpy_p2h.o)
pickle(_object*, unsigned long*)in libnrnpython.a(nrnpy_p2h.o)
_fcall in libnrnpython.a(nrnpy_hoc.o)
_hocobj_getattr in libnrnpython.a(nrnpy_hoc.o)
_hocobj_setattro in libnrnpython.a(nrnpy_hoc.o)
_mkref in libnrnpython.a(nrnpy_hoc.o)
_setpointer in libnrnpython.a(nrnpy_hoc.o)
_double_array_interface in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_hoc in libnrnpython.a(nrnpy_hoc.o)
_pysec_name in libnrnpython.a(nrnpy_nrn.o)
_section_getattro in libnrnpython.a(nrnpy_nrn.o)
_section_setattro in libnrnpython.a(nrnpy_nrn.o)
_segment_getattro in libnrnpython.a(nrnpy_nrn.o)
_segment_setattro in libnrnpython.a(nrnpy_nrn.o)
_mech_getattro in libnrnpython.a(nrnpy_nrn.o)
_mech_setattro in libnrnpython.a(nrnpy_nrn.o)
_nrnpy_setpointer_helper in libnrnpython.a(nrnpy_nrn.o)
"_PySys_SetArgv", referenced from:
_nrnpython_start in libnrnpython.a(nrnpython.o)
"_PyModule_AddObject", referenced from:
_nrnpy_hoc in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_reg_mech in libnrnpython.a(nrnpy_nrn.o)
_nrnpy_nrn in libnrnpython.a(nrnpy_nrn.o)
_nrnpy_nrn in libnrnpython.a(nrnpy_nrn.o)
_nrnpy_nrn in libnrnpython.a(nrnpy_nrn.o)
"_PySeqIter_New", referenced from:
_hocobj_iter in libnrnpython.a(nrnpy_hoc.o)
"_PyDict_SetItemString", referenced from:
_symlist2dict in libnrnpython.a(nrnpy_hoc.o)
_symlist2dict in libnrnpython.a(nrnpy_hoc.o)
_hocobj_getattr in libnrnpython.a(nrnpy_hoc.o)
_section_getattro in libnrnpython.a(nrnpy_nrn.o)
_section_getattro in libnrnpython.a(nrnpy_nrn.o)
_section_getattro in libnrnpython.a(nrnpy_nrn.o)
_section_getattro in libnrnpython.a(nrnpy_nrn.o)
_segment_getattro in libnrnpython.a(nrnpy_nrn.o)
_segment_getattro in libnrnpython.a(nrnpy_nrn.o)
_segment_getattro in libnrnpython.a(nrnpy_nrn.o)
_segment_getattro in libnrnpython.a(nrnpy_nrn.o)
_mech_getattro in libnrnpython.a(nrnpy_nrn.o)
_rangevars_add in libnrnpython.a(nrnpy_nrn.o)
_nrnpy_reg_mech in libnrnpython.a(nrnpy_nrn.o)
"_PyNumber_Float", referenced from:
_py2n_component in libnrnpython.a(nrnpy_p2h.o)
_praxis_efun in libnrnpython.a(nrnpy_p2h.o)
_guigetval in libnrnpython.a(nrnpy_p2h.o)
_nrnpy_numbercheck in libnrnpython.a(nrnpy_hoc.o)
_fcall in libnrnpython.a(nrnpy_hoc.o)
_mkref in libnrnpython.a(nrnpy_hoc.o)
"_PyDict_New", referenced from:
_hocobj_getattr in libnrnpython.a(nrnpy_hoc.o)
_section_getattro in libnrnpython.a(nrnpy_nrn.o)
_segment_getattro in libnrnpython.a(nrnpy_nrn.o)
_mech_getattro in libnrnpython.a(nrnpy_nrn.o)
_remake_pmech_types in libnrnpython.a(nrnpy_nrn.o)
_remake_pmech_types in libnrnpython.a(nrnpy_nrn.o)
"_PyObject_SetAttr", referenced from:
_guisetval in libnrnpython.a(nrnpy_p2h.o)
"_PyObject_GetAttrString", referenced from:
_hpoasgn in libnrnpython.a(nrnpy_p2h.o)
_py2n_component in libnrnpython.a(nrnpy_p2h.o)
setpickle() in libnrnpython.a(nrnpy_p2h.o)
setpickle() in libnrnpython.a(nrnpy_p2h.o)
_hocobj_getattr in libnrnpython.a(nrnpy_hoc.o)
_double_array_interface in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_hoc in libnrnpython.a(nrnpy_hoc.o)
"_PyObject_SetItem", referenced from:
_hpoasgn in libnrnpython.a(nrnpy_p2h.o)
"_PyObject_SetAttrString", referenced from:
_hpoasgn in libnrnpython.a(nrnpy_p2h.o)
"_PyDict_GetItemString", referenced from:
_hocobj_call in libnrnpython.a(nrnpy_hoc.o)
_hocobj_new in libnrnpython.a(nrnpy_hoc.o)
_double_array_interface in libnrnpython.a(nrnpy_hoc.o)
_double_array_interface in libnrnpython.a(nrnpy_hoc.o)
_double_array_interface in libnrnpython.a(nrnpy_hoc.o)
_segment_iter in libnrnpython.a(nrnpy_nrn.o)
_section_getattro in libnrnpython.a(nrnpy_nrn.o)
_section_setattro in libnrnpython.a(nrnpy_nrn.o)
_mech_next in libnrnpython.a(nrnpy_nrn.o)
_segment_getattro in libnrnpython.a(nrnpy_nrn.o)
_segment_getattro in libnrnpython.a(nrnpy_nrn.o)
_segment_setattro in libnrnpython.a(nrnpy_nrn.o)
_nrnpy_reg_mech in libnrnpython.a(nrnpy_nrn.o)
_NPySecObj_insert in libnrnpython.a(nrnpy_nrn.o)
_NPySecObj_insert in libnrnpython.a(nrnpy_nrn.o)
"_PyErr_Print", referenced from:
_py2n_component in libnrnpython.a(nrnpy_p2h.o)
_py2n_component in libnrnpython.a(nrnpy_p2h.o)
_py2n_component in libnrnpython.a(nrnpy_p2h.o)
hoccommand_exec_help1(_object*) in libnrnpython.a(nrnpy_p2h.o)
_call_picklef in libnrnpython.a(nrnpy_p2h.o)
"_PyExc_IndexError", referenced from:
_PyExc_IndexError$non_lazy_ptr in libnrnpython.a(nrnpy_hoc.o)
_PyExc_IndexError$non_lazy_ptr in libnrnpython.a(nrnpy_nrn.o)
"_PyRun_AnyFileExFlags", referenced from:
_nrnpy_pyrun in libnrnpython.a(nrnpython.o)
"_PyArg_ParseTupleAndKeywords", referenced from:
_NPySecObj_init in libnrnpython.a(nrnpy_nrn.o)
"_PyArg_ParseTuple", referenced from:
_nrnexec in libnrnpython.a(nrnpy_hoc.o)
_hoc_ac in libnrnpython.a(nrnpy_hoc.o)
_hocobj_baseattr in libnrnpython.a(nrnpy_hoc.o)
_mkref in libnrnpython.a(nrnpy_hoc.o)
_setpointer in libnrnpython.a(nrnpy_hoc.o)
_NPySegObj_new in libnrnpython.a(nrnpy_nrn.o)
_NPyMechObj_new in libnrnpython.a(nrnpy_nrn.o)
_NPySegObj_init in libnrnpython.a(nrnpy_nrn.o)
_NPyMechObj_init in libnrnpython.a(nrnpy_nrn.o)
_NPySecObj_connect in libnrnpython.a(nrnpy_nrn.o)
_NPySecObj_call in libnrnpython.a(nrnpy_nrn.o)
_NPySecObj_insert in libnrnpython.a(nrnpy_nrn.o)
"_PyType_GenericNew", referenced from:
_PyType_GenericNew$non_lazy_ptr in libnrnpython.a(nrnpy_nrn.o)
"_PyTuple_SetItem", referenced from:
_py2n_component in libnrnpython.a(nrnpy_p2h.o)
_call_picklef in libnrnpython.a(nrnpy_p2h.o)
"_PyExc_TypeError", referenced from:
_PyExc_TypeError$non_lazy_ptr in libnrnpython.a(nrnpy_hoc.o)
_PyExc_TypeError$non_lazy_ptr in libnrnpython.a(nrnpy_nrn.o)
"_PySequence_GetItem", referenced from:
_nrnpy_vec_from_python in libnrnpython.a(nrnpy_hoc.o)
"_PyRun_SimpleStringFlags", referenced from:
_nrnpy_augment_path in libnrnpython.a(nrnpython.o)
_nrnpy_augment_path in libnrnpython.a(nrnpython.o)
_nrnpy_augment_path in libnrnpython.a(nrnpython.o)
_nrnpython_start in libnrnpython.a(nrnpython.o)
_nrnpython_real in libnrnpython.a(nrnpython.o)
"_PyObject_IsInstance", referenced from:
_fcall in libnrnpython.a(nrnpy_hoc.o)
"_PyExc_ValueError", referenced from:
_PyExc_ValueError$non_lazy_ptr in libnrnpython.a(nrnpy_nrn.o)
"_PyLong_AsLong", referenced from:
_double_array_interface in libnrnpython.a(nrnpy_hoc.o)
"_Py_InitModule4", referenced from:
_nrnpy_hoc in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_nrn in libnrnpython.a(nrnpy_nrn.o)
"_PyFloat_FromDouble", referenced from:
_hpoasgn in libnrnpython.a(nrnpy_p2h.o)
_grphcmdtool in libnrnpython.a(nrnpy_p2h.o)
_grphcmdtool in libnrnpython.a(nrnpy_p2h.o)
_guisetval in libnrnpython.a(nrnpy_p2h.o)
_hocobj_getitem in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_vec_to_python in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_vec_to_python in libnrnpython.a(nrnpy_hoc.o)
"_PyOS_ReadlineFunctionPointer", referenced from:
_PyOS_ReadlineFunctionPointer$non_lazy_ptr in libnrnpython.a(nrnpython.o)
"__PyObject_New", referenced from:
_section_iter in libnrnpython.a(nrnpy_nrn.o)
_segment_iter in libnrnpython.a(nrnpy_nrn.o)
_pp_get_segment in libnrnpython.a(nrnpy_nrn.o)
_section_getattro in libnrnpython.a(nrnpy_nrn.o)
_section_getattro in libnrnpython.a(nrnpy_nrn.o)
_mech_next in libnrnpython.a(nrnpy_nrn.o)
_segment_getattro in libnrnpython.a(nrnpy_nrn.o)
_segment_getattro in libnrnpython.a(nrnpy_nrn.o)
_segment_getattro in libnrnpython.a(nrnpy_nrn.o)
_mech_getattro in libnrnpython.a(nrnpy_nrn.o)
_rangevars_add in libnrnpython.a(nrnpy_nrn.o)
"_PySequence_Check", referenced from:
_nrnpy_vec_from_python in libnrnpython.a(nrnpy_hoc.o)
_nrnpy_vec_to_python in libnrnpython.a(nrnpy_hoc.o)
"_PyLong_FromDouble", referenced from:
_hpoasgn in libnrnpython.a(nrnpy_p2h.o)
ld: symbol(s) not found
collect2: ld returned 1 exit status
make[3]: *** [nrniv] Error 1
make[3]: Leaving directory `/Users/benlhalt/NEURON/nrn-7.2/src/nrniv'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/Users/benlhalt/NEURON/nrn-7.2/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/Users/benlhalt/NEURON/nrn-7.2'
make: *** [all] Error 2
Configuring nrn 7.2 with
Code: Select all
./configure --prefix=$IDIR/nrn --with-iv=$IDIR/iv --with-nrnpython PYLIB='-framework Python' PYLIBLINK='-framework Python' --build=i386-apple-darwin9 --with-paranrn
(after recompiling iv with --build=i386-apple-darwin9) allows make, make install, and make after_install to finish w/o error. then setup.py produces the error:
Code: Select all
running install
running build
running build_py
copying /Applications/NEURON-7.2-test/nrn/share/nrn/lib/python/neuron/__init__.py -> build/lib.macosx-10.3-fat-2.7/neuron
copying /Applications/NEURON-7.2-test/nrn/share/nrn/lib/python/neuron/doc.py -> build/lib.macosx-10.3-fat-2.7/neuron
copying /Applications/NEURON-7.2-test/nrn/share/nrn/lib/python/neuron/gui.py -> build/lib.macosx-10.3-fat-2.7/neuron
copying /Applications/NEURON-7.2-test/nrn/share/nrn/lib/python/neuron/sections.py -> build/lib.macosx-10.3-fat-2.7/neuron
copying /Applications/NEURON-7.2-test/nrn/share/nrn/lib/python/neuron/tests/__init__.py -> build/lib.macosx-10.3-fat-2.7/neuron/tests
copying /Applications/NEURON-7.2-test/nrn/share/nrn/lib/python/neuron/tests/test_all.py -> build/lib.macosx-10.3-fat-2.7/neuron/tests
copying /Applications/NEURON-7.2-test/nrn/share/nrn/lib/python/neuron/tests/test_vector.py -> build/lib.macosx-10.3-fat-2.7/neuron/tests
running build_ext
building 'neuron.hoc' extension
mpicc -fno-strict-aliasing -fno-common -dynamic -isysroot /Developer/SDKs/MacOSX10.4u.sdk -arch ppc -arch i386 -g -O2 -DNDEBUG -g -O3 -I../.././src/oc -I../oc -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c inithoc.cpp -o build/temp.macosx-10.3-fat-2.7/inithoc.o
mpic++ -arch ppc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -isysroot /Developer/SDKs/MacOSX10.4u.sdk -g -bundle -undefined dynamic_lookup -arch ppc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -isysroot /Developer/SDKs/MacOSX10.4u.sdk -g build/temp.macosx-10.3-fat-2.7/inithoc.o -L/Applications/NEURON-7.2-test/nrn/i386/lib -L/Applications/NEURON-7.2-test/iv/i386/lib -lnrnpython -lnrnoc -loc -lnrniv -livoc -lmemacs -lmeschach -lneuron_gnu -lnrnmpi -lscopmath -lsparse13 -lsundials -lIVhines -lreadline -o build/lib.macosx-10.3-fat-2.7/neuron/hoc.so
ld: library not found for -lutil
collect2: ld returned 1 exit status
ld: library not found for -lutil
collect2: ld returned 1 exit status
lipo: can't open input file: /var/folders/Yl/YlKXeBKiEzSF6Nug9mEI+E+++TI/-Tmp-//ccPQgrYw.out (No such file or directory)
error: command 'mpic++' failed with exit status 1
before, when I replaced '-framework Python' with all the variables, but still used --build=i386 (not i386-apple-darwin) then make finished w/o error, but make after_install was not produced, and I got the error with nrn_load_dll. if I compile using --build=i386-apple-darwin9 but don't compile with mpi, then .setup.py works.