compiling issues on Mac
Posted: Thu Oct 25, 2018 5:59 pm
Hello,
I am new to Neuron and am working with several of the codes developed by Dr. Santhakumar's group (several in the DB!). They previously have used it on Windows and we tested that it still works.
However I am working on a MacBook Pro OS version 10.13.6
I believe my current issue is that the compiling is not working properly.
Following the steps on this page: everything seems to go well up until step E then I am not sure if anything is happening properly.
https://neuron.yale.edu/neuron/download/compilestd_osx
The output I get is down below, and I am still not able to get "nrnmech.dll was built successfully." when compiling.
Would appreciate any and all help,
Kind Regards,
Laura Dovek
:nrnenv lauradovek$ export IV=$IDIR/iv
:nrnenv lauradovek$ export N=$IDIR/nrn
:nrnenv lauradovek$ export CPU=x86_64
:nrnenv lauradovek$ export PATH=$IV/$CPU/bin:$N/$CPU/bin:$PATH
:nrnenv lauradovek$ export LD_LIBRARY_PATH=$HOME/local/lib/
:nrnenv lauradovek$ source ~/neuron/nrnenv
-bash: source: /Users/lauradovek/neuron/nrnenv: is a directory
:nrnenv lauradovek$ echo now executing ~/.profile
now executing /Users/lauradovek/.profile
:nrnenv lauradovek$ export PATH=$HOME/local/bin:$PATH
:nrnenv lauradovek$ export LD_LIBRARY_PATH=$HOME/local/lib/
:nrnenv lauradovek$ source ~/neuron/nrnenv
-bash: source: /Users/lauradovek/neuron/nrnenv: is a directory
:nrnenv lauradovek$ cd $HOME/neuron/nrn
:nrn lauradovek$ make after_install
-bash: make: command not found
I am new to Neuron and am working with several of the codes developed by Dr. Santhakumar's group (several in the DB!). They previously have used it on Windows and we tested that it still works.
However I am working on a MacBook Pro OS version 10.13.6
I believe my current issue is that the compiling is not working properly.
Following the steps on this page: everything seems to go well up until step E then I am not sure if anything is happening properly.
https://neuron.yale.edu/neuron/download/compilestd_osx
The output I get is down below, and I am still not able to get "nrnmech.dll was built successfully." when compiling.
Would appreciate any and all help,
Kind Regards,
Laura Dovek
:nrnenv lauradovek$ export IV=$IDIR/iv
:nrnenv lauradovek$ export N=$IDIR/nrn
:nrnenv lauradovek$ export CPU=x86_64
:nrnenv lauradovek$ export PATH=$IV/$CPU/bin:$N/$CPU/bin:$PATH
:nrnenv lauradovek$ export LD_LIBRARY_PATH=$HOME/local/lib/
:nrnenv lauradovek$ source ~/neuron/nrnenv
-bash: source: /Users/lauradovek/neuron/nrnenv: is a directory
:nrnenv lauradovek$ echo now executing ~/.profile
now executing /Users/lauradovek/.profile
:nrnenv lauradovek$ export PATH=$HOME/local/bin:$PATH
:nrnenv lauradovek$ export LD_LIBRARY_PATH=$HOME/local/lib/
:nrnenv lauradovek$ source ~/neuron/nrnenv
-bash: source: /Users/lauradovek/neuron/nrnenv: is a directory
:nrnenv lauradovek$ cd $HOME/neuron/nrn
:nrn lauradovek$ make after_install
-bash: make: command not found