UNIX/Linux

New Topic

191 topics

Topics

Replies

Views

Last post

configuring neuron on a cluster with a local install of python - and getting it to use that python with nrniv -python

Last post by hines « Fri Jun 02, 2023 6:42 am
Replies: 2
by countfizix » Thu Jun 01, 2023 3:06 pm

2 Replies

55 Views

Last post by hines
Fri Jun 02, 2023 6:42 am
[SOLVED] Unable to run nrniv -python with NEURON 8.0.0 installed via pip

Last post by silvan « Tue Nov 15, 2022 12:37 pm
Replies: 6
by silvan » Mon Nov 14, 2022 1:26 pm

6 Replies

618 Views

Last post by silvan
Tue Nov 15, 2022 12:37 pm
Unable to build NEURON v8 with CoreNeuron and GPU support

Last post by deka10 « Sat Jun 05, 2021 9:36 am
Replies: 4
by deka10 » Tue Jun 01, 2021 1:20 pm

4 Replies

2235 Views

Last post by deka10
Sat Jun 05, 2021 9:36 am
OpenMP based parallelism in NEURON

Last post by pkumbhar « Wed Feb 17, 2021 10:37 am
Replies: 1
by itaru » Fri May 15, 2020 1:05 am

1 Replies

6736 Views

Last post by pkumbhar
Wed Feb 17, 2021 10:37 am
Installing on Ubuntu 20.04 (GUI not working)

Last post by hines « Thu Oct 22, 2020 5:25 pm
Replies: 7
by sohaib786 » Sun Oct 04, 2020 8:22 am

7 Replies

3508 Views

Last post by hines
Thu Oct 22, 2020 5:25 pm
Configure fonts, etc in GUI

Last post by mattnolan « Thu Oct 01, 2020 4:12 am
Replies: 2
by mattnolan » Wed Sep 30, 2020 4:25 pm

2 Replies

1359 Views

Last post by mattnolan
Thu Oct 01, 2020 4:12 am
.mod files compilation issues

Last post by mmushtaq « Mon Jun 08, 2020 4:25 am
Replies: 4
by mmushtaq » Thu Jun 04, 2020 8:37 am

4 Replies

5442 Views

Last post by mmushtaq
Mon Jun 08, 2020 4:25 am
Open MPI error with h.nrnmpi_init(): mca_base_component_repository_open: unable to open mca_patcher_overwrite

Last post by hines « Wed Jun 03, 2020 9:08 am
Replies: 7
by tony-azevedo » Sat May 30, 2020 10:04 am

7 Replies

5523 Views

Last post by hines
Wed Jun 03, 2020 9:08 am
help installing on WSL

Last post by ramcdougal « Fri May 22, 2020 8:32 pm
Replies: 1
by jpduf » Fri May 22, 2020 12:11 pm

1 Replies

1703 Views

Last post by ramcdougal
Fri May 22, 2020 8:32 pm
Failed to run neuron inside virtual environment in Ubuntu18 with Anaconda (PATH issue?)

Last post by nicholasmg « Sun Mar 01, 2020 1:15 pm
Replies: 3
by zoccoler » Tue Jan 14, 2020 2:20 pm

3 Replies

3638 Views

Last post by nicholasmg
Sun Mar 01, 2020 1:15 pm
How do I collect data for plots without IV

Last post by ramcdougal « Wed Feb 19, 2020 5:13 pm
Replies: 4
by itaru » Mon Feb 17, 2020 3:50 am

4 Replies

2309 Views

Last post by ramcdougal
Wed Feb 19, 2020 5:13 pm
Which environmental variables do I need to setup for NEURON to work after rpm installation without sudo with cpio

Last post by hines « Mon Dec 23, 2019 8:34 am
Replies: 1
by ziemek » Thu Dec 19, 2019 12:43 pm

1 Replies

1973 Views

Last post by hines
Mon Dec 23, 2019 8:34 am
CentOS with RxD and NEURON build from source

Last post by ramcdougal « Tue Dec 17, 2019 5:13 pm
Replies: 1
by ziemek » Tue Dec 17, 2019 11:54 am

1 Replies

1882 Views

Last post by ramcdougal
Tue Dec 17, 2019 5:13 pm
nrnivmodl missing -lX11

Last post by RobinDS « Wed Nov 20, 2019 3:30 pm
Replies: 1
by RobinDS » Wed Nov 20, 2019 3:10 pm

1 Replies

4201 Views

Last post by RobinDS
Wed Nov 20, 2019 3:30 pm
No module named hoc37

Last post by RobinDS « Fri Nov 15, 2019 7:22 am
Replies: 11
by RBJ » Sun Apr 21, 2019 10:15 am

11 Replies

10870 Views

Last post by RobinDS
Fri Nov 15, 2019 7:22 am
PyNeuron + Ubuntu + Python 3.6

Last post by hines « Fri Nov 01, 2019 9:17 am
Replies: 5
by ziemek » Thu Oct 31, 2019 10:05 am

5 Replies

4170 Views

Last post by hines
Fri Nov 01, 2019 9:17 am
Problem installing on cluster

Last post by ted « Thu Jun 27, 2019 10:29 am
Replies: 2
by jtg374 » Tue Jun 25, 2019 11:17 pm

2 Replies

3637 Views

Last post by ted
Thu Jun 27, 2019 10:29 am
Installing NEURON on XUBUNTU

Last post by analkumar2 « Fri May 03, 2019 4:45 am
Replies: 6
by mferran1 » Sun Dec 09, 2007 1:14 pm

6 Replies

9011 Views

Last post by analkumar2
Fri May 03, 2019 4:45 am
nrnivmodl compiling in Linux

Last post by ted « Mon Jan 28, 2019 10:35 pm
Replies: 8
by dzocchi » Fri Jun 29, 2012 7:20 pm

8 Replies

17680 Views

Last post by ted
Mon Jan 28, 2019 10:35 pm
Which version of Neuron works with Python 2.7?

Last post by ted « Tue Dec 25, 2018 4:34 pm
Replies: 1
by Yaeger » Mon Dec 24, 2018 1:10 pm

1 Replies

3103 Views

Last post by ted
Tue Dec 25, 2018 4:34 pm
BUG.am: error: 'install.sh' is an anachronism; use 'install-sh' instead

Last post by selfdestructo « Thu Dec 06, 2018 4:25 pm
Replies: 1
by selfdestructo » Tue Dec 04, 2018 5:39 am

1 Replies

3899 Views

Last post by selfdestructo
Thu Dec 06, 2018 4:25 pm
Either nrngui or conda-forge neuron work, but not both?

Last post by ssp « Thu Oct 11, 2018 7:36 am
Replies: 6
by ssp » Fri Oct 05, 2018 7:15 am

6 Replies

6995 Views

Last post by ssp
Thu Oct 11, 2018 7:36 am
NEURON 7.6.2 Source Code Compilation and Python versions

Last post by ted « Tue Sep 25, 2018 10:51 am
Replies: 4
by Darshan » Tue Aug 21, 2018 4:55 am

4 Replies

6458 Views

Last post by ted
Tue Sep 25, 2018 10:51 am
Running nrngui on Ubuntu

Last post by ted « Fri Sep 21, 2018 10:44 am
Replies: 1
by neuronakash » Thu Sep 20, 2018 1:41 pm

1 Replies

3933 Views

Last post by ted
Fri Sep 21, 2018 10:44 am
Problems with 'make' when trying to install NEURON with MPI+Python (Ubuntu 16.04)

Last post by acnavasolive « Fri Sep 21, 2018 5:05 am
Replies: 25
by acnavasolive » Wed Sep 12, 2018 7:34 am
1

2
25 Replies

27299 Views

Last post by acnavasolive
Fri Sep 21, 2018 5:05 am
upgrade problem in Ubuntu [SOLVED]

Last post by fabien tell « Thu Aug 09, 2018 4:33 am
Replies: 3
by fabien tell » Wed Aug 08, 2018 5:34 am

3 Replies

4433 Views

Last post by fabien tell
Thu Aug 09, 2018 4:33 am
compilation with interviews

Last post by ted « Mon Jul 16, 2018 8:10 am
Replies: 1
by rtm4x » Sun Jul 15, 2018 5:10 pm

1 Replies

5442 Views

Last post by ted
Mon Jul 16, 2018 8:10 am
libreadline.so.0: cannot open shared object file: No such file or directory

Last post by ted « Sun Jun 24, 2018 10:49 am
Replies: 1
by alexandrapierri » Sat Jun 23, 2018 8:54 pm

1 Replies

3267 Views

Last post by ted
Sun Jun 24, 2018 10:49 am
Make error on Piz Daint cluster

Last post by bremen « Sat Jun 23, 2018 5:09 am

by bremen » Sat Jun 23, 2018 5:09 am

0 Replies

3729 Views

Last post by bremen
Sat Jun 23, 2018 5:09 am
[SOLVED] undefined references in makefile?

Last post by sdtran « Thu Jun 14, 2018 5:05 pm
Replies: 1
by sdtran » Thu Jun 14, 2018 1:55 pm

1 Replies

29247 Views

Last post by sdtran
Thu Jun 14, 2018 5:05 pm
NEURON and Python Installation on Ubuntu 16.04

Last post by aeronlaffere « Wed May 30, 2018 4:32 pm
Replies: 2
by aeronlaffere » Thu May 17, 2018 9:42 am

2 Replies

5231 Views

Last post by aeronlaffere
Wed May 30, 2018 4:32 pm
Interviews Not Installing

Last post by ted « Fri May 18, 2018 11:40 am
Replies: 3
by Krishna Chaitanya » Thu May 17, 2018 10:17 am

3 Replies

4049 Views

Last post by ted
Fri May 18, 2018 11:40 am
Invalid syntax in "hclass3.py to hclass3.pyc"

Last post by hines « Sun Mar 11, 2018 7:58 pm
Replies: 1
by bremen » Sun Mar 11, 2018 6:11 am

1 Replies

3526 Views

Last post by hines
Sun Mar 11, 2018 7:58 pm
Error in MOD compilation with a Slurm script

Last post by bremen « Tue Feb 20, 2018 2:23 pm
Replies: 3
by bremen » Thu Feb 15, 2018 4:20 pm

3 Replies

3810 Views

Last post by bremen
Tue Feb 20, 2018 2:23 pm
Bug found(?): Linux Mint 18 with Anaconda

Last post by Mohamed_Hisham « Wed Jan 03, 2018 6:00 pm
Replies: 1
by Javier_PalmaEspinosa » Sun Nov 06, 2016 12:15 pm

1 Replies

15902 Views

Last post by Mohamed_Hisham
Wed Jan 03, 2018 6:00 pm
Neuron 7.5-2 on Manjaro Linux shows no UI elements

Last post by ted « Mon Dec 18, 2017 12:10 am
Replies: 2
by cengique » Sat Dec 16, 2017 8:36 pm

2 Replies

5517 Views

Last post by ted
Mon Dec 18, 2017 12:10 am
"Point process not located in a section" error with v7.5 but not v7.4

Last post by tclose « Mon Nov 27, 2017 2:05 am
Replies: 26
by tclose » Thu Nov 02, 2017 10:26 pm
1

2
26 Replies

106394 Views

Last post by tclose
Mon Nov 27, 2017 2:05 am
long suffix in .mod files results in *** buffer overflow detected *** error

Last post by hines « Mon Nov 06, 2017 9:28 am
Replies: 1
by JustasB » Sat Nov 04, 2017 7:04 pm

1 Replies

13336 Views

Last post by hines
Mon Nov 06, 2017 9:28 am
NEURON 7.4 1370 vs 1380

Last post by ecker.andris « Wed Oct 25, 2017 1:33 pm
Replies: 5
by ecker.andris » Tue Sep 12, 2017 11:14 am

5 Replies

13053 Views

Last post by ecker.andris
Wed Oct 25, 2017 1:33 pm
Download link for source code v7.4 not v7.5

Last post by ted « Thu Oct 12, 2017 11:59 pm
Replies: 3
by tclose » Wed Oct 11, 2017 11:49 pm

3 Replies

11842 Views

Last post by ted
Thu Oct 12, 2017 11:59 pm
Fedora 26 rpm install. libtinfo

Last post by hines « Thu Sep 28, 2017 1:49 pm
Replies: 1
by vrossum » Wed Sep 27, 2017 9:37 am

1 Replies

10380 Views

Last post by hines
Thu Sep 28, 2017 1:49 pm
Another problem using Modelview

Last post by hines « Wed Aug 09, 2017 2:25 pm
Replies: 7
by catharina » Tue Aug 01, 2017 6:37 am

7 Replies

12879 Views

Last post by hines
Wed Aug 09, 2017 2:25 pm
Error on Vector.as_numpy()

Last post by leonelmd « Fri Jun 09, 2017 11:11 am
Replies: 4
by leonelmd » Thu Jun 08, 2017 10:37 pm

4 Replies

11472 Views

Last post by leonelmd
Fri Jun 09, 2017 11:11 am
Bug: CVode - stdrun.hoc - tstop

Last post by ted « Fri Jun 02, 2017 10:25 am
Replies: 1
by cafischer » Fri Jun 02, 2017 6:05 am

1 Replies

9800 Views

Last post by ted
Fri Jun 02, 2017 10:25 am
Building nrn-7.5-master1572 with Intel compilers, IntelMPI

Last post by pmoolcha « Mon May 15, 2017 4:26 pm
Replies: 4
by pmoolcha » Thu May 11, 2017 12:47 pm

4 Replies

12755 Views

Last post by pmoolcha
Mon May 15, 2017 4:26 pm
Problem loadg modules in Neuron Python

Last post by viniciuslima « Mon Apr 24, 2017 3:18 pm
Replies: 6
by viniciuslima » Fri Apr 21, 2017 12:47 pm

6 Replies

12987 Views

Last post by viniciuslima
Mon Apr 24, 2017 3:18 pm
Running neuron with MPI using debian package

Last post by aaronmil « Thu Apr 20, 2017 2:43 pm
Replies: 1
by roybens » Sat Mar 11, 2017 5:38 pm

1 Replies

9728 Views

Last post by aaronmil
Thu Apr 20, 2017 2:43 pm
configuring on supercomputer/cluster without shared libs

Last post by roybens « Sat Mar 11, 2017 5:33 pm
Replies: 2
by roybens » Thu Jan 05, 2017 11:57 am

2 Replies

10320 Views

Last post by roybens
Sat Mar 11, 2017 5:33 pm
Install parallel NEURON on Bio-Linux

Last post by ted « Tue Feb 21, 2017 10:40 am
Replies: 1
by DriesB » Tue Feb 21, 2017 7:16 am

1 Replies

9814 Views

Last post by ted
Tue Feb 21, 2017 10:40 am
ImportError: No module named site

Last post by PeterG « Tue Feb 21, 2017 6:57 am
Replies: 6
by PeterG » Fri Jan 27, 2017 3:20 am

6 Replies

28454 Views

Last post by PeterG
Tue Feb 21, 2017 6:57 am

New Topic

191 topics

Return to Board Index

Forum permissions

You cannot post new topics in this forum
You cannot reply to topics in this forum
You cannot edit your posts in this forum
You cannot delete your posts in this forum