NEURON design

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NEURON + Python
When Python is the interpreter, what is a good
design for the interface to the basic NEURON
concepts.
Moderator: hines
Topics: 369

369 Topics

1899 Posts

Last post Re: ampanmda mod file working…
by tom_morse View the latest post
Fri Jun 05, 2020 4:13 pm
Reaction-diffusion in NEURON
Extending NEURON to handle reaction-diffusion problems.
Moderators: hines, wwlytton, ramcdougal
Topics: 56

56 Topics

246 Posts

Last post Re: Problem initializing with…
by mandy View the latest post
Thu Apr 23, 2020 3:16 pm

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Last post

Use NEURON's native GUI tools with Python!

Last post by ted « Fri Sep 27, 2019 11:23 am
Replies: 2
by ted » Tue Aug 08, 2017 2:48 pm

2 Replies

12088 Views

Last post by ted
Fri Sep 27, 2019 11:23 am
More NEURON + Python documentation

Last post by ramcdougal « Wed Oct 24, 2018 7:07 am
Replies: 6
by ted » Mon Mar 24, 2008 10:17 am

6 Replies

24605 Views

Last post by ramcdougal
Wed Oct 24, 2018 7:07 am
More NEURON + Python resources

Last post by wjbeaver « Wed Dec 22, 2010 4:38 pm
Replies: 4
by mctavish » Wed Dec 01, 2010 3:13 pm

4 Replies

16429 Views

Last post by wjbeaver
Wed Dec 22, 2010 4:38 pm
ampanmda mod file working with AlphaSynapse

Last post by tom_morse « Fri Jun 05, 2020 4:13 pm
Replies: 3
by parent41 » Fri Jun 05, 2020 10:53 am

3 Replies

16 Views

Last post by tom_morse
Fri Jun 05, 2020 4:13 pm
range morphology and mechanism syntax for sections in python

Last post by ted « Sat May 30, 2020 2:02 am
Replies: 9
by nicholasmg » Mon May 11, 2020 11:26 pm

9 Replies

327 Views

Last post by ted
Sat May 30, 2020 2:02 am
using compiled mod files from python script in a different direcory

Last post by nicholasmg « Wed Apr 29, 2020 6:09 pm
Replies: 2
by nicholasmg » Wed Apr 29, 2020 5:43 pm

2 Replies

268 Views

Last post by nicholasmg
Wed Apr 29, 2020 6:09 pm
Problem initializing with rxd.Rate

Last post by mandy « Thu Apr 23, 2020 3:16 pm
Replies: 2
by mandy » Wed Apr 22, 2020 2:50 pm

2 Replies

393 Views

Last post by mandy
Thu Apr 23, 2020 3:16 pm
cell counting on an image with python

Last post by ted « Wed Apr 15, 2020 4:20 pm
Replies: 3
by fpointeau » Mon Apr 13, 2020 11:54 am

3 Replies

527 Views

Last post by ted
Wed Apr 15, 2020 4:20 pm
MultiCompartmentReaction Section List Mismatch

Last post by adamjhn « Mon Apr 13, 2020 12:57 pm
Replies: 1
by amerg » Fri Apr 10, 2020 4:17 pm

1 Replies

324 Views

Last post by adamjhn
Mon Apr 13, 2020 12:57 pm
Record from multiple neurons

Last post by ted « Thu Apr 09, 2020 12:05 pm
Replies: 2
by Mrohani57 » Wed Apr 08, 2020 6:47 pm

2 Replies

324 Views

Last post by ted
Thu Apr 09, 2020 12:05 pm
Copy a nrn object in Python?

Last post by ramcdougal « Sat Apr 04, 2020 4:55 pm
Replies: 5
by igor » Wed Apr 01, 2020 1:02 pm

5 Replies

492 Views

Last post by ramcdougal
Sat Apr 04, 2020 4:55 pm
inserting synaptic mechanisms from mod file

Last post by ted « Fri Apr 03, 2020 1:37 pm
Replies: 1
by Natali83 » Wed Apr 01, 2020 1:44 pm

1 Replies

362 Views

Last post by ted
Fri Apr 03, 2020 1:37 pm
NetStim and NetCon

Last post by ramcdougal « Thu Apr 02, 2020 9:47 am
Replies: 3
by anandhupresannan » Mon Mar 09, 2020 1:15 am

3 Replies

485 Views

Last post by ramcdougal
Thu Apr 02, 2020 9:47 am
Cell membrane with PMCA pump

Last post by adamjhn « Fri Mar 06, 2020 12:24 pm
Replies: 3
by ziemek » Fri Jan 03, 2020 10:56 am

3 Replies

549 Views

Last post by adamjhn
Fri Mar 06, 2020 12:24 pm
Using vectors as arguments for pt3dadd

Last post by neuromau « Tue Mar 03, 2020 9:06 pm
Replies: 2
by neuromau » Mon Mar 02, 2020 3:46 pm

2 Replies

360 Views

Last post by neuromau
Tue Mar 03, 2020 9:06 pm
Multicomp model, ECS, pumps and strange concentrations

Last post by ramcdougal « Fri Feb 28, 2020 10:50 am
Replies: 3
by bremen » Thu Feb 27, 2020 10:17 am

3 Replies

329 Views

Last post by ramcdougal
Fri Feb 28, 2020 10:50 am
Vector Values

Last post by ramcdougal « Wed Feb 26, 2020 9:46 am
Replies: 2
by Jahanzaib » Tue Feb 25, 2020 2:50 pm

2 Replies

380 Views

Last post by ramcdougal
Wed Feb 26, 2020 9:46 am
Making a Nucleus

Last post by adamjhn « Tue Feb 25, 2020 10:25 am
Replies: 1
by RBJ » Sat Nov 30, 2019 9:36 am

1 Replies

487 Views

Last post by adamjhn
Tue Feb 25, 2020 10:25 am
length scales and SparseEfficiencyWarning

Last post by bschneiders « Wed Feb 05, 2020 3:29 pm
Replies: 5
by bschneiders » Fri Nov 08, 2019 7:02 pm

5 Replies

684 Views

Last post by bschneiders
Wed Feb 05, 2020 3:29 pm
For loop over section's segments in Python and HOC returns different values

Last post by ramcdougal « Fri Jan 31, 2020 5:15 pm
Replies: 4
by ziemek » Fri Jan 31, 2020 5:14 am

4 Replies

492 Views

Last post by ramcdougal
Fri Jan 31, 2020 5:15 pm
Rset or reboot neuron without exist in python

Last post by ramcdougal « Wed Jan 29, 2020 8:07 pm
Replies: 6
by anandhupresannan » Wed Feb 27, 2019 1:14 am

6 Replies

1360 Views

Last post by ramcdougal
Wed Jan 29, 2020 8:07 pm
Dynamically accessing vectors in python (_ref_x)

Last post by cstricker « Sun Jan 19, 2020 5:27 pm
Replies: 5
by cstricker » Thu Jan 09, 2020 2:10 am

5 Replies

541 Views

Last post by cstricker
Sun Jan 19, 2020 5:27 pm
different section names, morphology - h.Section

Last post by bremen « Thu Jan 16, 2020 4:10 pm
Replies: 2
by bremen » Fri Jan 10, 2020 4:53 pm

2 Replies

409 Views

Last post by bremen
Thu Jan 16, 2020 4:10 pm
Finding middle of a section

Last post by ted « Mon Jan 13, 2020 1:00 pm
Replies: 4
by ssrihari » Sat Jan 11, 2020 5:50 pm

4 Replies

467 Views

Last post by ted
Mon Jan 13, 2020 1:00 pm
Converting HOC extracellular to Python

Last post by ssrihari « Sat Jan 11, 2020 7:36 pm
Replies: 3
by ssrihari » Tue Dec 31, 2019 5:42 pm

3 Replies

496 Views

Last post by ssrihari
Sat Jan 11, 2020 7:36 pm
Checking the units

Last post by ziemek « Fri Jan 03, 2020 10:53 am
Replies: 2
by ziemek » Fri Jan 03, 2020 9:11 am

2 Replies

303 Views

Last post by ziemek
Fri Jan 03, 2020 10:53 am
The best practice of Ca2+ pumps on the cell membrane implemented in RxD model

Last post by adamjhn « Fri Jan 03, 2020 9:45 am
Replies: 3
by ziemek » Wed Dec 18, 2019 7:10 am

3 Replies

438 Views

Last post by adamjhn
Fri Jan 03, 2020 9:45 am
Print Issue after using .connect()

Last post by ted « Thu Jan 02, 2020 10:05 pm
Replies: 1
by ssrihari » Tue Dec 31, 2019 4:19 pm

1 Replies

393 Views

Last post by ted
Thu Jan 02, 2020 10:05 pm
Associative arrays in HOC

Last post by ted « Wed Jan 01, 2020 7:48 pm
Replies: 5
by vogdb » Fri Dec 13, 2019 5:36 pm

5 Replies

619 Views

Last post by ted
Wed Jan 01, 2020 7:48 pm
Video Tutorial on how to compile .mod file and incorporate it with Python for simulation

Last post by ted « Tue Dec 17, 2019 1:18 pm
Replies: 1
by shhschen » Mon Dec 16, 2019 9:34 pm

1 Replies

529 Views

Last post by ted
Tue Dec 17, 2019 1:18 pm
rxd, crxd and dx

Last post by ziemek « Wed Dec 11, 2019 5:28 am
Replies: 2
by ziemek » Tue Dec 10, 2019 3:11 pm

2 Replies

475 Views

Last post by ziemek
Wed Dec 11, 2019 5:28 am
How to access HOC arrays from Python?

Last post by ziemek « Tue Dec 10, 2019 2:10 pm
Replies: 2
by ziemek » Wed Dec 04, 2019 8:00 am

2 Replies

549 Views

Last post by ziemek
Tue Dec 10, 2019 2:10 pm
The equilibrium between the FS and external

Last post by ted « Thu Dec 05, 2019 11:21 pm
Replies: 20
by ahmed.hamzah » Sun Oct 20, 2019 8:42 pm
1

2
20 Replies

1861 Views

Last post by ted
Thu Dec 05, 2019 11:21 pm
Shape plot update from Python

Last post by ziemek « Tue Dec 03, 2019 3:06 am
Replies: 2
by ziemek » Mon Dec 02, 2019 1:22 pm

2 Replies

525 Views

Last post by ziemek
Tue Dec 03, 2019 3:06 am
Node.d (Diffusion) for Node3D objects

Last post by RBJ « Sat Nov 30, 2019 9:29 am
Replies: 2
by RBJ » Sat Oct 26, 2019 8:20 am

2 Replies

601 Views

Last post by RBJ
Sat Nov 30, 2019 9:29 am
How to get synapse offset/position

Last post by vogdb « Wed Nov 27, 2019 3:52 am
Replies: 5
by vogdb » Thu Nov 21, 2019 5:46 am

5 Replies

669 Views

Last post by vogdb
Wed Nov 27, 2019 3:52 am
Is it possible to run nrnivmodl from python?

Last post by RobinDS « Fri Nov 22, 2019 3:37 pm
Replies: 4
by RobinDS » Fri Nov 22, 2019 9:38 am

4 Replies

904 Views

Last post by RobinDS
Fri Nov 22, 2019 3:37 pm
Frequency dependent activation of g protein models

Last post by jofrony « Tue Nov 12, 2019 6:20 am

by jofrony » Tue Nov 12, 2019 6:20 am

0 Replies

647 Views

Last post by jofrony
Tue Nov 12, 2019 6:20 am
Tracking External and Internal Na & K concentration

Last post by ted « Wed Nov 06, 2019 10:02 pm
Replies: 2
by ahmed.hamzah » Tue Nov 05, 2019 4:24 pm

2 Replies

511 Views

Last post by ted
Wed Nov 06, 2019 10:02 pm
How to add synapses to an Adex model

Last post by anandhupresannan « Wed Nov 06, 2019 1:16 am
Replies: 4
by anandhupresannan » Fri Oct 25, 2019 12:55 am

4 Replies

767 Views

Last post by anandhupresannan
Wed Nov 06, 2019 1:16 am
Parallel NMODL array assignment

Last post by duytanph « Thu Oct 31, 2019 3:49 pm
Replies: 8
by duytanph » Thu Oct 17, 2019 9:11 pm

8 Replies

1183 Views

Last post by duytanph
Thu Oct 31, 2019 3:49 pm
accessing the same instantiation of a cell template from another python script

Last post by alexandrapierri « Thu Oct 24, 2019 12:37 pm
Replies: 4
by alexandrapierri » Wed Oct 16, 2019 5:38 pm

4 Replies

891 Views

Last post by alexandrapierri
Thu Oct 24, 2019 12:37 pm
Problems using VClamp

Last post by ted « Mon Oct 21, 2019 9:43 am
Replies: 1
by camilhamdane » Mon Oct 21, 2019 4:40 am

1 Replies

609 Views

Last post by ted
Mon Oct 21, 2019 9:43 am
Different v_init for different neurons in a network

Last post by ted « Thu Oct 10, 2019 11:14 am
Replies: 1
by Johannes » Wed Oct 09, 2019 11:30 am

1 Replies

727 Views

Last post by ted
Thu Oct 10, 2019 11:14 am
NEURON 7.7.1 RxD issue

Last post by bremen « Mon Oct 07, 2019 2:52 pm
Replies: 2
by bremen » Thu Oct 03, 2019 8:45 am

2 Replies

1137 Views

Last post by bremen
Mon Oct 07, 2019 2:52 pm
running hoc files accompanied by comand line arguments, in Python

Last post by alexandrapierri « Wed Oct 02, 2019 5:53 pm
Replies: 2
by alexandrapierri » Wed Sep 25, 2019 3:44 pm

2 Replies

805 Views

Last post by alexandrapierri
Wed Oct 02, 2019 5:53 pm
error in saving a voltage trace into a figure

Last post by ted « Tue Sep 24, 2019 12:19 pm
Replies: 2
by alexandrapierri » Tue Sep 24, 2019 11:20 am

2 Replies

783 Views

Last post by ted
Tue Sep 24, 2019 12:19 pm
Filter Mechanism params by NMODL PARAMETER

Last post by vogdb « Sat Sep 21, 2019 10:02 am
Replies: 8
by vogdb » Thu Sep 19, 2019 7:25 am

8 Replies

1355 Views

Last post by vogdb
Sat Sep 21, 2019 10:02 am
Export to .hoc with CellBuilder from Python

Last post by vogdb « Wed Sep 11, 2019 12:07 pm
Replies: 2
by vogdb » Tue Sep 10, 2019 12:32 pm

2 Replies

1553 Views

Last post by vogdb
Wed Sep 11, 2019 12:07 pm
TypeError: sec is not a Section"

Last post by ted « Sat Sep 07, 2019 12:09 pm
Replies: 3
by alexandrapierri » Tue Sep 03, 2019 7:43 pm

3 Replies

1201 Views

Last post by ted
Sat Sep 07, 2019 12:09 pm

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