NEURON + Python

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Use NEURON's native GUI tools with Python!

Last post by ted « Fri Sep 27, 2019 11:23 am
Replies: 2
by ted » Tue Aug 08, 2017 2:48 pm

2 Replies

16084 Views

Last post by ted
Fri Sep 27, 2019 11:23 am
More NEURON + Python documentation

Last post by ramcdougal « Wed Oct 24, 2018 7:07 am
Replies: 6
by ted » Mon Mar 24, 2008 10:17 am

6 Replies

28705 Views

Last post by ramcdougal
Wed Oct 24, 2018 7:07 am
More NEURON + Python resources

Last post by wjbeaver « Wed Dec 22, 2010 4:38 pm
Replies: 4
by mctavish » Wed Dec 01, 2010 3:13 pm

4 Replies

19220 Views

Last post by wjbeaver
Wed Dec 22, 2010 4:38 pm
ModelView and ModuleNotFoundError: No module named 'numpy'

Last post by wlkath « Fri Jun 02, 2023 9:49 am
Replies: 7
by wlkath » Wed May 17, 2023 4:26 pm

7 Replies

116 Views

Last post by wlkath
Fri Jun 02, 2023 9:49 am
How to cut the simulation in-between into two runs?

Last post by ramcdougal « Thu Jun 01, 2023 9:53 pm
Replies: 6
by gaoyy18 » Mon May 22, 2023 5:44 am

6 Replies

109 Views

Last post by ramcdougal
Thu Jun 01, 2023 9:53 pm
The integration method and results of one compartment with only HH channel

Last post by gaoyy18 « Mon May 22, 2023 6:01 am
Replies: 1
by gaoyy18 » Tue Mar 14, 2023 12:35 pm

1 Replies

332 Views

Last post by gaoyy18
Mon May 22, 2023 6:01 am
Plotshape question

Last post by wlkath « Tue May 16, 2023 12:04 pm
Replies: 2
by wlkath » Sat May 13, 2023 5:20 pm

2 Replies

69 Views

Last post by wlkath
Tue May 16, 2023 12:04 pm
What is a NEURON equivalent of a point-neuron?

Last post by ted « Fri Apr 28, 2023 11:04 am
Replies: 3
by mi2n » Thu Apr 13, 2023 12:24 pm

3 Replies

136 Views

Last post by ted
Fri Apr 28, 2023 11:04 am
"Linear Circuits Builder" programmatically (Python)

Last post by mgiugliano « Thu Mar 30, 2023 1:30 pm

by mgiugliano » Thu Mar 30, 2023 1:30 pm

0 Replies

128 Views

Last post by mgiugliano
Thu Mar 30, 2023 1:30 pm
Null pointer error when trying to access the pointer through python

Last post by ted « Wed Mar 29, 2023 7:16 pm
Replies: 4
by ipv1313 » Sun Mar 26, 2023 6:06 am

4 Replies

155 Views

Last post by ted
Wed Mar 29, 2023 7:16 pm
Unbounded Membrane Voltage Increase

Last post by ted « Mon Mar 20, 2023 3:23 pm
Replies: 5
by ajpc6d » Mon Mar 13, 2023 1:41 pm

5 Replies

328 Views

Last post by ted
Mon Mar 20, 2023 3:23 pm
Using external file to set parameter value in MOD file

Last post by ted « Thu Mar 16, 2023 12:02 am
Replies: 3
by Robert Claar » Fri Feb 17, 2023 9:05 am

3 Replies

196 Views

Last post by ted
Thu Mar 16, 2023 12:02 am
What is the name of built-in inhibitive synapse function in NEURON corresponding with h.ExpSyn()?

Last post by cassiehu « Thu Feb 23, 2023 2:54 am
Replies: 7
by cassiehu » Sun Feb 19, 2023 7:22 am

7 Replies

184 Views

Last post by cassiehu
Thu Feb 23, 2023 2:54 am
Stimulating a Cell

Last post by ajpc6d « Tue Feb 14, 2023 8:13 pm
Replies: 10
by ajpc6d » Tue Jan 03, 2023 9:30 pm

10 Replies

700 Views

Last post by ajpc6d
Tue Feb 14, 2023 8:13 pm
Steady state init with voltage VS with SaveState

Last post by ted « Thu Feb 09, 2023 1:30 pm
Replies: 4
by gabrielggn » Thu Feb 02, 2023 2:02 pm

4 Replies

330 Views

Last post by ted
Thu Feb 09, 2023 1:30 pm
how to add a current clamp in Python?

Last post by cassiehu « Sun Feb 05, 2023 7:33 am
Replies: 13
by cassiehu » Sat Dec 03, 2022 7:12 am

13 Replies

777 Views

Last post by cassiehu
Sun Feb 05, 2023 7:33 am
Nstack - stack too deep in python

Last post by ted « Fri Jan 27, 2023 11:34 am
Replies: 2
by gabrielggn » Mon Sep 19, 2022 2:58 pm

2 Replies

437 Views

Last post by ted
Fri Jan 27, 2023 11:34 am
Switching L2/3 morphology in model but preserving intrinsic and synaptic properties.

Last post by alexandrapierri « Mon Dec 05, 2022 1:37 pm
Replies: 2
by alexandrapierri » Fri Dec 02, 2022 12:09 am

2 Replies

347 Views

Last post by alexandrapierri
Mon Dec 05, 2022 1:37 pm
recording delivered pulses using pulsedistrib.zip

Last post by ted « Wed Nov 16, 2022 1:34 am
Replies: 3
by alexandrapierri » Tue Nov 15, 2022 12:18 am

3 Replies

332 Views

Last post by ted
Wed Nov 16, 2022 1:34 am
Extracellular Stimuli with Python + Vector Play

Last post by Kayco « Thu Nov 10, 2022 11:03 am
Replies: 2
by Kayco » Fri Nov 04, 2022 4:35 pm

2 Replies

1479 Views

Last post by Kayco
Thu Nov 10, 2022 11:03 am
Depolarization step during voltage clamp

Last post by alexandrapierri « Tue Nov 08, 2022 10:48 pm
Replies: 4
by alexandrapierri » Mon Oct 31, 2022 9:56 pm

4 Replies

408 Views

Last post by alexandrapierri
Tue Nov 08, 2022 10:48 pm
record calcium concentration only from pyramidal cells

Last post by alexandrapierri « Thu Nov 03, 2022 10:35 pm
Replies: 2
by alexandrapierri » Thu Oct 27, 2022 3:07 pm

2 Replies

362 Views

Last post by alexandrapierri
Thu Nov 03, 2022 10:35 pm
Accessing Pointers instantiated through Python

Last post by oitani « Thu Sep 01, 2022 3:39 pm
Replies: 6
by oitani » Wed Aug 10, 2022 1:12 pm

6 Replies

3225 Views

Last post by oitani
Thu Sep 01, 2022 3:39 pm
POINTER is not thread safe

Last post by ted « Thu Aug 11, 2022 9:58 pm
Replies: 6
by alexandrapierri » Fri Aug 05, 2022 10:27 pm

6 Replies

1607 Views

Last post by ted
Thu Aug 11, 2022 9:58 pm
Recording synaptic currents

Last post by alexandrapierri « Wed Jul 27, 2022 6:16 pm
Replies: 4
by alexandrapierri » Mon Jul 25, 2022 1:34 pm

4 Replies

604 Views

Last post by alexandrapierri
Wed Jul 27, 2022 6:16 pm
Can the simulation results of Python and HOC be different?

Last post by virtualkss « Wed Jul 20, 2022 10:05 pm
Replies: 5
by virtualkss » Mon Jul 18, 2022 5:56 am

5 Replies

623 Views

Last post by virtualkss
Wed Jul 20, 2022 10:05 pm
Minor typo in tutorial

Last post by ramcdougal « Mon Jun 13, 2022 3:56 pm
Replies: 1
by fietkiewicz » Mon Jun 13, 2022 3:45 pm

1 Replies

404 Views

Last post by ramcdougal
Mon Jun 13, 2022 3:56 pm
Mechanisms ignored when attempting to initialize events

Last post by pacificmadrone « Wed Jun 01, 2022 3:26 pm
Replies: 2
by pacificmadrone » Thu May 12, 2022 2:55 pm

2 Replies

2487 Views

Last post by pacificmadrone
Wed Jun 01, 2022 3:26 pm
IClamp and ImpedanceRatio in python

Last post by rmaina « Tue Feb 15, 2022 2:12 pm
Replies: 2
by rmaina » Fri Feb 11, 2022 12:46 pm

2 Replies

706 Views

Last post by rmaina
Tue Feb 15, 2022 2:12 pm
Recording multiple netcon's weight with one synapse mechanism

Last post by ted « Fri Dec 31, 2021 11:11 am
Replies: 3
by dragon88hj » Thu Dec 30, 2021 1:58 am

3 Replies

710 Views

Last post by ted
Fri Dec 31, 2021 11:11 am
solving differential equation describing Vm

Last post by ted « Sat Dec 04, 2021 4:57 pm
Replies: 1
by finesniper » Fri Dec 03, 2021 5:07 pm

1 Replies

3703 Views

Last post by ted
Sat Dec 04, 2021 4:57 pm
hh.mod + Python + membrane potential at several points of the soma

Last post by ted « Tue Nov 16, 2021 12:01 pm
Replies: 5
by smetens » Wed Jun 09, 2021 11:09 am

5 Replies

2282 Views

Last post by ted
Tue Nov 16, 2021 12:01 pm
Time dependent NetCon weight

Last post by ted « Thu Nov 04, 2021 12:10 pm
Replies: 1
by ido4848 » Thu Nov 04, 2021 3:35 am

1 Replies

662 Views

Last post by ted
Thu Nov 04, 2021 12:10 pm
added a synapse with python

Last post by ted « Wed Nov 03, 2021 2:04 pm
Replies: 1
by OronKotler » Sun Oct 31, 2021 4:08 am

1 Replies

681 Views

Last post by ted
Wed Nov 03, 2021 2:04 pm
How to set spike detection threshold for pc.spike_record

Last post by Johannes « Thu Oct 14, 2021 9:40 am
Replies: 2
by Johannes » Wed Oct 13, 2021 6:03 am

2 Replies

3643 Views

Last post by Johannes
Thu Oct 14, 2021 9:40 am
Error running NEURON with embedded Python

Last post by ted « Wed Oct 13, 2021 12:37 pm
Replies: 3
by ttarnaud » Fri Dec 07, 2018 10:56 am

3 Replies

6583 Views

Last post by ted
Wed Oct 13, 2021 12:37 pm
problem instantiating a hoc template from python

Last post by ted « Sun Sep 19, 2021 1:25 am
Replies: 3
by alexandrapierri » Fri Sep 17, 2021 8:46 pm

3 Replies

1007 Views

Last post by ted
Sun Sep 19, 2021 1:25 am
undefined symbol: nrnpython_start

Last post by Feanor « Fri Sep 17, 2021 10:57 am
Replies: 8
by Feanor » Mon Sep 13, 2021 4:25 pm

8 Replies

1791 Views

Last post by Feanor
Fri Sep 17, 2021 10:57 am
Using h.APCount with the extracellular mechanism

Last post by ted « Sat Jun 26, 2021 12:13 am
Replies: 1
by andrewq » Fri Jun 25, 2021 4:27 pm

1 Replies

782 Views

Last post by ted
Sat Jun 26, 2021 12:13 am
Why does this Python Hoc Cell Instantiation from Hoc with getattr() work after adding (morpho_path) behind.

Last post by watersun « Sun Jun 20, 2021 12:00 pm

by watersun » Sun Jun 20, 2021 12:00 pm

0 Replies

1113 Views

Last post by watersun
Sun Jun 20, 2021 12:00 pm
silencing netstim during simulation.

Last post by alexandrapierri « Tue May 11, 2021 9:43 am
Replies: 2
by alexandrapierri » Mon May 10, 2021 9:51 pm

2 Replies

1012 Views

Last post by alexandrapierri
Tue May 11, 2021 9:43 am
Correcting poor code design

Last post by ted « Mon May 03, 2021 4:05 pm
Replies: 3
by aliaped » Mon May 03, 2021 10:39 am

3 Replies

1311 Views

Last post by ted
Mon May 03, 2021 4:05 pm
Assigning values to a mechanism over all sections in anatomically detailed model

Last post by aliaped « Mon Apr 26, 2021 10:25 am
Replies: 3
by aliaped » Mon Apr 12, 2021 10:30 am

3 Replies

1214 Views

Last post by aliaped
Mon Apr 26, 2021 10:25 am
Simulation Setup when using a List of NetCons, VecStims and Exp2Syn for multiple spike train stimulation

Last post by ted « Thu Apr 15, 2021 5:41 pm
Replies: 3
by Liz_Stan_88 » Wed Apr 14, 2021 4:03 pm

3 Replies

1409 Views

Last post by ted
Thu Apr 15, 2021 5:41 pm
Myelin modeling

Last post by ted « Wed Apr 14, 2021 11:54 am
Replies: 3
by OronKotler » Thu Mar 25, 2021 3:13 am

3 Replies

1378 Views

Last post by ted
Wed Apr 14, 2021 11:54 am
Impulse Response for all locations

Last post by ted « Tue Apr 13, 2021 11:45 am
Replies: 1
by tmoldwin » Tue Apr 13, 2021 7:35 am

1 Replies

908 Views

Last post by ted
Tue Apr 13, 2021 11:45 am
initbatser.py

Last post by ted « Wed Mar 24, 2021 10:26 am
Replies: 3
by margo.k3008 » Tue Mar 23, 2021 1:44 pm

3 Replies

968 Views

Last post by ted
Wed Mar 24, 2021 10:26 am
Kernel dies in Jupyter notebook when attempting to import NEURON

Last post by ted « Thu Mar 18, 2021 12:06 pm
Replies: 3
by oitani » Mon Mar 15, 2021 5:57 pm

3 Replies

4146 Views

Last post by ted
Thu Mar 18, 2021 12:06 pm
hoc file is not a template

Last post by ted « Tue Mar 02, 2021 12:31 pm
Replies: 6
by alexandrapierri » Thu Feb 25, 2021 11:45 am

6 Replies

1711 Views

Last post by ted
Tue Mar 02, 2021 12:31 pm
Update to __init__.py?

Last post by ramcdougal « Mon Mar 01, 2021 2:15 pm
Replies: 1
by cvaaga » Mon Mar 01, 2021 1:55 pm

1 Replies

896 Views

Last post by ramcdougal
Mon Mar 01, 2021 2:15 pm

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