Search found 8 matches

by theiera
Thu Dec 07, 2017 6:17 am
Forum: NetPyNE
Topic: Bug in plasticity option
Replies: 1
Views: 2477

Bug in plasticity option

Hello everybody, I was experimenting with the STDP plasticity and I found out it does not work in Netpyne. The problem is simple: to activate the plasticity in the Documentation of "Connectivity Rules" is written: "plasticity (optional) - Plasticity mechanism to use for this connections." I could tr...
by theiera
Tue Dec 05, 2017 4:05 am
Forum: NetPyNE
Topic: Inspect the NEURON object
Replies: 1
Views: 3222

Re: Inspect the NEURON object

Hello,

found it!

Code: Select all

(pops, cells, conns, stims, simData) = sim.create(netParams = p['netParams'], simConfig = p['simConfig'], output = True)
Thanks anyway!

Sergio
by theiera
Tue Dec 05, 2017 3:51 am
Forum: NetPyNE
Topic: Inspect the NEURON object
Replies: 1
Views: 3222

Inspect the NEURON object

Hello everybody, I'm having troubles to get a correct import of a NEURON models. It imports fine but when it runs it does not spike as it should. I would like to be able to inspect the actual values of the parameters the NETPYNE sets in the NEURON objects. Is there a way to access the objects/sectio...
by theiera
Mon Nov 27, 2017 9:36 am
Forum: NetPyNE
Topic: How to set initial voltage of simulation
Replies: 6
Views: 11399

Re: How to set initial voltage of simulation

Dear Ted and Salvador, thanks for the quick and clear response. I realise now that my question was addressing a more general issue than simply setting the v_init of a section. As a consequence of this I realise only now that I should have opened a new post rather than posting my question as a follow...
by theiera
Thu Nov 23, 2017 5:04 am
Forum: NetPyNE
Topic: How to set initial voltage of simulation
Replies: 6
Views: 11399

Re: How to set initial voltage of simulation

Hi all, I find it difficult to find how to set the initial voltage for all sections in one cell. In the documentation is explained how to do it for a single section. "e.g. cellRule['secs']['soma']['vinit'] = -72" I could successfully do it this way: goc_cellRule['secLists'] = {'all':[ 'elec', 'soma'...
by theiera
Wed Oct 18, 2017 12:28 pm
Forum: NetPyNE
Topic: Setup for multiple runs of the same model
Replies: 3
Views: 9155

Setup for multiple runs of the same model

Hello Salvador, Hello NetPyners, I'm finally stating to use netpyne for my simulations, wonderful project you made! At the Janelia Farm you told me that it is possible to have in one simulation multiple runs of the same model automatically managing the output data and their analysis. I feel quite "s...
by theiera
Wed Nov 21, 2007 11:37 am
Forum: Adding new mechanisms and functions to NEURON
Topic: Higher order derivatives in NMODL
Replies: 3
Views: 2721

I already wrote the mod file to solve a family of 1st order ODE. Since in the nmodl400.pdf file (pg18) is written that it's possible to write ODE with higher order derivatives I tried to do so, without success. Searching for info i got to the file deriv.c where a long comment shows an example for MO...
by theiera
Wed Nov 21, 2007 6:59 am
Forum: Adding new mechanisms and functions to NEURON
Topic: Higher order derivatives in NMODL
Replies: 3
Views: 2721

Higher order derivatives in NMODL

We're currently trying to implement a second order equation in a mod file. According to the example given inside the deriv.c file (src/nmodl/deriv.c) it should be easy to do so. However, the given example does not compile and it contains old NMODL commands. The article, which so far has been my refe...