Search found 37 matches
- Fri Feb 23, 2007 7:59 am
- Forum: General questions and discussions about computational neuroscience
- Topic: supercomputing/parallel
- Replies: 0
- Views: 3873
supercomputing/parallel
I need more speed! So, one avenue I am thinking of is supercomputing and/or parallel. I have tried other avenues - such as less compartments etc. - but these have been a little unsatisfactory. I thought about parallel some time ago, but was concerned then because I have just a single neuron and as I...
- Fri Oct 13, 2006 5:46 pm
- Forum: Other questions
- Topic: running multiple NEURON simulations
- Replies: 0
- Views: 2925
running multiple NEURON simulations
Is it safe to run a number of different NEURON simulations at the same time on Windows XP? Could they corrupt one another?
- Fri Oct 13, 2006 5:35 pm
- Forum: Anatomically detailed models
- Topic: coupling compartment
- Replies: 2
- Views: 5029
coupling compartment
I want to make a coupling compartment between my soma and the dendritic tree - so I can control how "coupled" these 2 entities are. BUT actually - what would be better is if I dont even have a coupling compartment - but a coupling parameter - a coupling resistance value. This way I dont ha...
- Fri Sep 29, 2006 11:00 am
- Forum: Anatomically detailed models
- Topic: collapse a dendritic tree
- Replies: 17
- Views: 18873
yes it works cristoph. and it returns the same results as Michael Hines' code. And it returns the same output as original code for 3 compartments. So, I am very happy. I now have 2 code versions doing what I want to do!! Brilliant!! Thanks so, so much. One remaining issue is that I dont know if you'...
- Fri Sep 29, 2006 9:29 am
- Forum: Anatomically detailed models
- Topic: collapse a dendritic tree
- Replies: 17
- Views: 18873
I have got Hines code working. I am now trying to code up csh code to see if this is equivalent. but get this error message returned. ERROR MESSAGE RETURNED: nrniv subscript out of range x in C:address near line 618 cycmake() csh code is cut and paste below. /* --------------------------------------...
- Thu Sep 28, 2006 4:30 pm
- Forum: Anatomically detailed models
- Topic: collapse a dendritic tree
- Replies: 17
- Views: 18873
Thanks so so much csh. Great!! What you have put looks great. What you have posted looks around about the same kind of thing that Michael Hines has just kindly sent me. What do you think? I think I'm right in saying your's and Michael's solutions are equivalent, but am not 100 percent. I have cut an...
- Thu Sep 28, 2006 1:56 pm
- Forum: Anatomically detailed models
- Topic: collapse a dendritic tree
- Replies: 17
- Views: 18873
I am so, so sorry. But there has been an awful mistake. The coding got corrupted in the cutting and pasting to the forum and the code for the working 4 compartments and the code for the non-working 10 compartments was NOT cut and paste correctly. SO, I now will cut and paste, and check, the code aga...
- Thu Sep 28, 2006 12:08 pm
- Forum: Anatomically detailed models
- Topic: collapse a dendritic tree
- Replies: 17
- Views: 18873
- Thu Sep 28, 2006 11:59 am
- Forum: Anatomically detailed models
- Topic: collapse a dendritic tree
- Replies: 17
- Views: 18873
- Tue Sep 26, 2006 5:21 pm
- Forum: Anatomically detailed models
- Topic: collapse a dendritic tree
- Replies: 17
- Views: 18873
- Tue Sep 26, 2006 4:37 pm
- Forum: Anatomically detailed models
- Topic: collapse a dendritic tree
- Replies: 17
- Views: 18873
- Tue Sep 26, 2006 4:29 pm
- Forum: Anatomically detailed models
- Topic: collapse a dendritic tree
- Replies: 17
- Views: 18873
Thanks so much to Dimitris who gave me this tip: --------- Are you sure these vectors have the correct length? proc initcyc(){ cycL=new Vector(4,0) cycdiam=new Vector(4,0) cycnin=new Vector(4,0) } --------- This got me to a version of the code working for 4 compartments as opposed to 3. I have cut a...
- Fri Sep 22, 2006 7:55 am
- Forum: Anatomically detailed models
- Topic: collapse a dendritic tree
- Replies: 17
- Views: 18873
the distributed nature of a dendritic arbor creates an uncoupled environment for synapses and membrane channels. collapsing a dendritic arbor into one with fewer branches, or a single tree, or a long cyclinder couples them. Im not putting synapses onto my dendritic tree so this isn't so much of a w...
- Thu Sep 14, 2006 3:59 pm
- Forum: Anatomically detailed models
- Topic: collapse a dendritic tree
- Replies: 17
- Views: 18873
thanks mike so much for your kind reply. I have changed the code to incorporate the line change you suggested. Unfortunately the code still doesn't work. dam! I understand the alternative approach you suggested is superiour but I'm afraid I don't think I have the programming capability to do it. I a...
- Thu Sep 14, 2006 12:03 pm
- Forum: Anatomically detailed models
- Topic: collapse a dendritic tree
- Replies: 17
- Views: 18873
Still really struggling with this. So would really really appreciate some help. Below I have cut and paste 1) the original code and 2) my best stab at modifying it (which is not working code - there must be something wrong with it, although I cannot see what) - to collapse a dendritic tree into 4 co...