Search found 10 matches

by aliaped
Mon May 24, 2021 11:27 am
Forum: The GUI
Topic: GUI bug in netbuilder?
Replies: 4
Views: 224

Re: GUI bug in netbuilder?

On it. Thanks Ted. I will follow up shortly.
by aliaped
Mon May 24, 2021 10:40 am
Forum: The GUI
Topic: GUI bug in netbuilder?
Replies: 4
Views: 224

Re: GUI bug in netbuilder?

Interesting, when I tried to save the NetBuilder and assorted paraphernalia to a .ses file, I got an endless loop of seg fault errors. I restarted, all is well again. Or, rather, right back where we started. Resizing the window was something I tried, with no luck. Here is the version header. NEURON ...
by aliaped
Mon May 24, 2021 9:51 am
Forum: The GUI
Topic: GUI bug in netbuilder?
Replies: 4
Views: 224

GUI bug in netbuilder?

Hi there, Thank you for taking the time to read my question today. I am having a problem connecting cells in the netbuilder. I read the netbuilder tutorial and think I am correctly using the GUI to connect cells to synapse labels instead of the synapse locations, but am having no luck. The line stay...
by aliaped
Mon May 03, 2021 12:43 pm
Forum: NEURON + Python
Topic: Correcting poor code design
Replies: 3
Views: 351

Re: Correcting poor code design

Hi Ted, Thank you for your thorough response. I fear I left something out of my initial question: while i love the gui tools, I would like to use as few of them as possible. I am trying to fully control and modify my model with python code to eliminate the clicking of buttons. I don't know how to co...
by aliaped
Mon May 03, 2021 10:39 am
Forum: NEURON + Python
Topic: Correcting poor code design
Replies: 3
Views: 351

Correcting poor code design

Hi there! First off, thank you for taking time to look into my question. I started my project working mostly with the gui, and am now transitioning to working largely with python. When I was building my gui projects, I saved all my items (rig, UI, CellBuilder, etc) in one session file. I saved a new...
by aliaped
Mon Apr 12, 2021 10:30 am
Forum: NEURON + Python
Topic: Assigning values to a mechanism over all sections in anatomically detailed model
Replies: 3
Views: 325

Assigning values to a mechanism over all sections in anatomically detailed model

Hi there, First off, thank you for taking the time to look into my question. I am new to scripting in python, but have been working with .hoc and neuron for the last year or so. I am trying to do something in python that seems elementary, and can be done in the .hoc interpreter with one line of code...
by aliaped
Wed Feb 24, 2021 1:26 pm
Forum: The GUI
Topic: Convert a channel from .mod to the channel builder to modify gating in the GUI
Replies: 4
Views: 623

Re: Convert a channel from .mod to the channel builder to modify gating in the GUI

Dear Ted, Thank you for your prompt and thorough answer to my question! I have actually been doing what you suggested, graphing the ninf and pinf values from the the .mod file vs. voltage and visualising/modifying the parameters in the Mechanism Viewer. I was drawn to the channel builder for a singl...
by aliaped
Tue Feb 23, 2021 2:47 pm
Forum: The GUI
Topic: Convert a channel from .mod to the channel builder to modify gating in the GUI
Replies: 4
Views: 623

Convert a channel from .mod to the channel builder to modify gating in the GUI

Hi there! First off, thank you in advance for reading my question. I have a .mod file from modelDB specifying a high threshold potassium channel. I am not sure the language, but I think it is NMODL because it is a .mod file. See code below. : High threshold potassium chanel from : Contribution of th...
by aliaped
Thu Aug 13, 2020 10:32 am
Forum: MSWin
Topic: DLL LOAD FAILED importing python packages from anaconda into neuron
Replies: 1
Views: 1004

DLL LOAD FAILED importing python packages from anaconda into neuron

I am having issues with neuron recognizing and finding python packages for import. Install SOP: https://neuron.yale.edu/ftp/neuron/nrn_mswin_install.pdf Output from bash terminal: bash-4.4$ cd c:/nrn bash-4.4$ mpiexec -n 2 nrniv -mpi test0.hoc NEURON -- VERSION 7.7.2 7.7 (2b7985ba) 2019-06-20 Duke, ...