Search found 5 matches

by ilariac
Mon Oct 12, 2020 3:47 am
Forum: Reaction-diffusion in NEURON
Topic: Help measuring/plotting the cytoplasmic Ca flux (nM/s) as function of Ca concentration
Replies: 2
Views: 565

Help measuring/plotting the cytoplasmic Ca flux (nM/s) as function of Ca concentration

Dear everyone, I am a new user of the rxd module and I am trying to plot the cytoplasmic calcium flux (nM/s) produced by a calcium pump located on the plasma membrane. I would like to plot the calcium flux as function of calcium concentration during a quick influx and a successive recovery. I have u...
by ilariac
Thu Jun 27, 2019 8:39 am
Forum: Other questions
Topic: translate KINETIC block to DERIVATIVE block
Replies: 4
Views: 1810

Re: translate KINETIC block to DERIVATIVE block

I solved the problem by writing in the python file:

Code: Select all

for seg in cell:
    seg.mech.iA=initial_values[0]
    seg.mech.iB=initial_values[1]
    seg.mech.iC=initial_values[2]
Thank you for your help,

Ilaria
by ilariac
Wed Jun 26, 2019 5:24 pm
Forum: Other questions
Topic: translate KINETIC block to DERIVATIVE block
Replies: 4
Views: 1810

Re: translate KINETIC block to DERIVATIVE block

Thank you for the reply. I have been thinking about what you wrote for the "initial conditions' issue". Just to make sure I understood, did you mean to solve the linear system by hand and write in the INITIAL block the analytic form of A and B? Which if I am not wrong is something like: A=...
by ilariac
Mon Jun 24, 2019 5:15 am
Forum: Other questions
Topic: translate KINETIC block to DERIVATIVE block
Replies: 4
Views: 1810

translate KINETIC block to DERIVATIVE block

Hi, I am trying to compare two mod files but one is written using the KINETIC block and the other the DERIVATIVE block. Since I would like to solve the ODEs using the same method and not (SOLVE kin METHOD sparse) or (SOLVE deriv METHOD cnexp), I am thinking to rewrite the KINETIC block as the DERIVA...