www.neuron.yale.edu

Well either you run the scripts generating the mod files from those channels (the ones you've compiled correspond to the NEURON version) or I think the best would be if you could write me an e-mail to andras.ecker@epfl.ch and I'll send you everything instead of putting big files to github. Thanks, A...

oh, good point. Just added it!

András

Hi Salva, you can find the repo here: https://github.com/mbezaire/ca1/tree/development/ and we are mostly using: `NeuroML2/network/GenerateHippocampalNet_oc.py` which creates an xml (or h5 based on the size) simulation, which gets converted to NetPyNE (by jNeuroML) during zipping for NSG here: https...

Hi Salva,

we've implemented the changes you've suggested and tried to save spike only from 100 cells and traces for ~40 but I still get the same error!
For smaller network size I was able to save spikes from up to 500 cells and traces from ~40.

Do you have any other idea in mind?

Thanks,
András

Thank you Ted!

Hi Salva, I saw on the github repo that you are working with Padraig and Marianne, so I assume the conversion of the model into netpyne was done correctly. I've discussed with them in the last couple conferences converting the CA1 model into netpyne, so glad to see this is happening. Please let me k...

Maybe I'm missing something but there are no configure files in the mentioned git repos and I can't compile them after cloning
using What do I miss?

Thank you very much Ted!

Hi, I'm using jNeuroML generated NetPyNE codes to run a big scale hippocampal model on NSG (tool: OSBPYNEURON74 @ Comet) (see model repo here: https://github.com/mbezaire/ca1/tree/development) and after increasing the size to ~650 cells I get an error, which looks like a memory error to me, but acco...

Hi, I was wondering what are the major differences in 7.4 version 1370 and 1380? After a global upgrade (I guess I upgraded NEURON too), some of my models (mostly the ones with calcium dynamics) failed to reproduce the same spike times... Is it possible to have multiple installs and change between t...