Search found 13 matches

by Mohamed_Hisham
Fri Nov 08, 2019 11:25 pm
Forum: SimAgent
Topic: Welcome to SimAgent
Replies: 5
Views: 798

Re: Welcome to SimAgent

@Mohamed_Hisham Absolutely, SimAgent works offline. I regularly close the application while I wait for jobs to finish. Once you reopen SimAgent and re-select your project folder SimAgent should automatically reach back out to NSG for updates. Let me know if you run into any issues! Tyler That's Gre...
by Mohamed_Hisham
Fri Nov 08, 2019 11:12 pm
Forum: SimAgent
Topic: Welcome to SimAgent
Replies: 5
Views: 798

Re: Welcome to SimAgent

Thanks, Tyler very much. Yes, one of the features that will make this tool my right hand is working offline, I mean my simulation takes usually more than one day to run, so usually I send the jobs to the NSG and let them work overnight, but using the SimAgent, I am not sure , should I keep SimAgent ...
by Mohamed_Hisham
Mon Oct 28, 2019 12:07 pm
Forum: SimAgent
Topic: Welcome to SimAgent
Replies: 5
Views: 798

Re: Welcome to SimAgent

Thanks, Tyler very much,
I have used the tool, it did help increaseing my productivity instead of uploading and downloading the simulations files from the html portal one by one.

the tool is easy to use, and saved me a lot of time, thank you very much.
by Mohamed_Hisham
Wed Dec 12, 2018 8:27 pm
Forum: Hot tips
Topic: Soma stacks and the Import3d tool
Replies: 5
Views: 2666

Re: Soma stacks and the Import3d tool

Thank you very much Ted.
by Mohamed_Hisham
Mon Dec 10, 2018 6:07 pm
Forum: Hot tips
Topic: Soma stacks and the Import3d tool
Replies: 5
Views: 2666

Re: Soma stacks and the Import3d tool

Hello Ted,

I have sent you the ASC Neurolucida file on the email.

Thank you very much for you help
by Mohamed_Hisham
Fri Dec 07, 2018 10:10 pm
Forum: Hot tips
Topic: Soma stacks and the Import3d tool
Replies: 5
Views: 2666

Re: Soma stacks and the Import3d tool

Hello ted, thanks for these great information. I have a Neurolucida file (ASC), where the soma is constructed into multiple contours, the file is fine, the contours are monotonically increasing, so when importing the file to neuron I can see the whole structure including the soma. but when exporting...
by Mohamed_Hisham
Wed Jan 03, 2018 6:00 pm
Forum: UNIX/Linux
Topic: Bug found(?): Linux Mint 18 with Anaconda
Replies: 1
Views: 13966

Re: Bug found(?): Linux Mint 18 with Anaconda

oh!!, Thank you very much , I already wasted two Days with these Errors i was trying to compile neuron from source with my anaconda python package ./configure --with-iv=/usr/local/iv --with-nrnpython=/home/mhisham/anaconda2/bin/python --with-paranrn and i got these Errors M_create(unsigned long&, un...
by Mohamed_Hisham
Wed Aug 09, 2017 5:57 pm
Forum: NEURON + Python
Topic: Use NEURON's native GUI tools with Python!
Replies: 2
Views: 10695

Re: Use NEURON's native GUI tools with Python!

Hello Ted I used the function , and it is very helpful actually , thank you very much. def Section(name): h("create "+name) return h.__getattribute__(name) I wanted to know how to extend the previous function to make it work like this one : self.soma = h.Section(name='soma', cell=self) as the previo...
by Mohamed_Hisham
Wed Jul 26, 2017 2:27 pm
Forum: NetPyNE
Topic: NEURON: section stack overflow
Replies: 5
Views: 10106

Re: NEURON: section stack overflow

Thank you very much
by Mohamed_Hisham
Mon Jul 24, 2017 6:10 pm
Forum: NetPyNE
Topic: NEURON: section stack overflow
Replies: 5
Views: 10106

Re: NEURON: section stack overflow

Thanks Salvador very much.

is there any modifications i can do manual within the NetPyNE 0.7.1 version so i can import the cell 3D structure. till the next version is released.
please let me know.

Thanks in advance
by Mohamed_Hisham
Tue Jul 18, 2017 6:33 pm
Forum: NetPyNE
Topic: NEURON: section stack overflow
Replies: 5
Views: 10106

NEURON: section stack overflow

Hello. I used to import cell template from a hoc file using the command: cellRule0 = netParams.importCellParams(label = 'FR',conds={'cellType': 'FR', 'cellModel': 'HH3D'}, fileName= 'FRcellTemplate.hoc', cellName='FR_Cell',importSynMechs=False) netParams.cellParams['FRrule'] = cellRule0 the cell tem...
by Mohamed_Hisham
Mon Jul 17, 2017 1:57 pm
Forum: NetPyNE
Topic: Adding uniform Synapses on 3D structure Cell
Replies: 4
Views: 9064

Re: Adding uniform Synapses on 3D structure Cell

uniform synapses Does your definition of "uniform" have any relationship to what anatomists call "synaptic density"? Two different definitions of synaptic density have been proposed. One is # synapses/dendritic length in um and the other is # synapses/dendritic surface area in um2. The last time I ...
by Mohamed_Hisham
Thu Jul 13, 2017 5:43 pm
Forum: NetPyNE
Topic: Adding uniform Synapses on 3D structure Cell
Replies: 4
Views: 9064

Adding uniform Synapses on 3D structure Cell

Hello I am trying to put uniform synapses on a 3D structure of a motoneuron , the motoneuron consist of 731 section. I want to spread the synapses uniformly on the 3D structure of the cell. so that if a section consist of 3 nseg , we should Have 3 synapses on that section. SysIVibrationFreq = 180 Sy...