Search found 6 matches

by kfolw
Wed Mar 11, 2015 10:25 am
Forum: Specific models
Topic: Soltesz Lab dentate gyrus network model (2014)
Replies: 5
Views: 12094

Re: Soltesz Lab dentate gyrus network model (2014)

The hoc file from bitbucket is model-2.3.hoc and I get the same error when I specify my input filename as Model-2.3.hoc
by kfolw
Mon Mar 09, 2015 12:33 pm
Forum: Specific models
Topic: Soltesz Lab dentate gyrus network model (2014)
Replies: 5
Views: 12094

Soltesz Lab dentate gyrus network model (2014)

Hi, I don't know how much you deal with running NEURON through the Neuroscience Gateway Portal but any help would be appreciated! I am now trying to run the Soltesz Lab dentate gyrus network model available from OpenSourceBrain.org: http://www.opensourcebrain.org/projects/dentate and I am trying to ...
by kfolw
Wed Feb 18, 2015 4:23 pm
Forum: Specific models
Topic: Units errors in mod files Morgan/Santhakumar 2007 model
Replies: 7
Views: 11956

Re: Units errors in mod files Morgan/Santhakumar 2007 model

Ah, I understand now and it worked to fix all my mod files! Thank you for a very clear and detailed explanation. Now however, when I go to compile these mod files, there appears to be a mystery file in the same directory called ~$bgka.mod that causes an error. It's not part of the original model cod...
by kfolw
Wed Feb 18, 2015 10:08 am
Forum: Specific models
Topic: Units errors in mod files Morgan/Santhakumar 2007 model
Replies: 7
Views: 11956

Re: Units errors in mod files Morgan/Santhakumar 2007 model

Thank you for the explanations, however after comparing to some of the other files I still am having trouble debugging. for example in the LcaMig.mod file, after fixing DegC to be degC, I get the following error: model 1.1.1.1 1994/10/12 17:22:51 Checking units of ./LcaMig.mod units: 1 K units: 0.00...
by kfolw
Mon Feb 09, 2015 11:18 am
Forum: Specific models
Topic: Units errors in mod files Morgan/Santhakumar 2007 model
Replies: 7
Views: 11956

Re: Units errors in mod files Morgan/Santhakumar 2007 model

Thank you that helped resolve some of my errors! However, I keep running into this next error: model 1.1.1.1 1994/10/12 17:22:51 Checking units of ./LcaMig.mod Need declaration in UNITS block of the form: (DegC) (units) Cannot recognize the units: DegC at line 75 in file ./LcaMig.mod FUNCTION KTF(ce...
by kfolw
Fri Feb 06, 2015 10:00 pm
Forum: Specific models
Topic: Units errors in mod files Morgan/Santhakumar 2007 model
Replies: 7
Views: 11956

Units errors in mod files Morgan/Santhakumar 2007 model

When checking the units of the mod files in this model through the neuron GUI, 5 of the mod files came back with errors: tca, LcaMig, CaBK, bgka, ppsyn. Is there a way to fix these errors? I am using Windows 7. Specific errors listed below: For CaBK.mod: model 1.1.1.1 1994/10/12 17:22:51 Checking un...