Search found 9 matches
- Fri Feb 27, 2015 9:05 am
- Forum: Anatomically detailed models
- Topic: templating a multi-compartmental cell
- Replies: 6
- Views: 12422
Re: templating a multi-compartmental cell
Dear Ted, Thank you for the tips. I double-checked the mechanisms: my itGHK was correctly inserted. I will send you a .zip file which contains: 1. The working version without localized T-current (just serve as a comparison) 2. The localizing T-current, but not-yet-working versions: a. in which proc ...
- Thu Feb 26, 2015 8:47 am
- Forum: Anatomically detailed models
- Topic: templating a multi-compartmental cell
- Replies: 6
- Views: 12422
Re: templating a multi-compartmental cell
Thank you so much Ted, these all worked well and now I have the template. The templated cell has same firing patterns as the original one ( without localizing T-current ), so I suppose I'm safe when no T-current is localized. However, there are two things I want to confirm since T-current setting is...
- Wed Feb 25, 2015 4:19 pm
- Forum: Anatomically detailed models
- Topic: templating a multi-compartmental cell
- Replies: 6
- Views: 12422
Re: templating a multi-compartmental cell
Dear Ted, I appreciate your informative and detailed reply. I tried to proceed with this approach and there were some questions along the way. 1. Some parameters were not accessible via the CellBuilder interface. Can I set them up directly by editing the .tem script generated from CellBuilder? For e...
- Mon Feb 23, 2015 11:23 am
- Forum: Anatomically detailed models
- Topic: templating a multi-compartmental cell
- Replies: 6
- Views: 12422
templating a multi-compartmental cell
Hello, I'm trying to template my multi-compartmental cell base on a previous .geo file ( https://senselab.med.yale.edu/ModelDB/ShowModel.cshtml?model=279&file=%5cdendtc%5ccells%5ctc200.geo). For this purpose, I tried to follow the tutorial here: http://www.anc.ed.ac.uk/school/neuron/tutorial/tut...
- Mon Apr 07, 2014 8:01 am
- Forum: OS X
- Topic: error message: nrnmpi_dynam.h: No such file or directory
- Replies: 8
- Views: 11565
Re: error message: nrnmpi_dynam.h: No such file or directory
ibukis-MacBook-Pro:~ ibuki$ /Applications/NEURON-7.3/nrn/x86_64/bin/nrniv NEURON -- Release 7.3 (1059:24c7ee8666e7) 24c7ee8666e7 Duke, Yale, and the BlueBrain Project -- Copyright 1984-2014 See http://www.neuron.yale.edu/neuron/credits oc> Yes, this command seems to work. Any further comments on ho...
- Sat Apr 05, 2014 3:00 pm
- Forum: OS X
- Topic: error message: nrnmpi_dynam.h: No such file or directory
- Replies: 8
- Views: 11565
Re: error message: nrnmpi_dynam.h: No such file or directory
No, I don't think it works:
Code: Select all
ibukis-MacBook-Pro:~ ibuki$ /Users/ibuki/neuron/nrn/src/nrniv
-bash: /Users/ibuki/neuron/nrn/src/nrniv: is a directory
- Sat Apr 05, 2014 8:10 am
- Forum: OS X
- Topic: error message: nrnmpi_dynam.h: No such file or directory
- Replies: 8
- Views: 11565
Re: error message: nrnmpi_dynam.h: No such file or directory
Hello Ted, 1. Yes, I have a file like that named "nrnenv", which includes the content: export IV=$IDIR/iv export N=$IDIR/nrn export CPU=x86_64 export PATH=$IV/$CPU/bin:$N/$CPU/bin:$PATH ibukis-MacBook-Pro:neuron ibuki$ ls iv nrn nrnenv I'm sorry, but should the export IV=$IDIR/ be export I...
- Fri Apr 04, 2014 8:14 am
- Forum: OS X
- Topic: error message: nrnmpi_dynam.h: No such file or directory
- Replies: 8
- Views: 11565
Re: error message: nrnmpi_dynam.h: No such file or directory
Thank you! This works perfectly fine. However, when I was trying to do the test run, it gives an error message like this: Ibukis-MacBook-Pro:parallel ibuki$ mpirun -n 4 $N/$CPU/bin/nrniv -mpi test0.hoc -------------------------------------------------------------------------- mpirun was unable to la...
- Thu Apr 03, 2014 10:12 pm
- Forum: OS X
- Topic: error message: nrnmpi_dynam.h: No such file or directory
- Replies: 8
- Views: 11565
error message: nrnmpi_dynam.h: No such file or directory
Hello everyone, I'm trying to install the newest version of NEURON on my osx 10.7 with openmpi. Everything seemed fine to me until I ran into this: Making all in nrnmpi /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src/nrnoc -I../../src/oc -I../../src/parall...